PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.13956s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 732aa MW: 81836.1 Da PI: 8.2932 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.7 | 6.2e-06 | 257 | 279 | 4 | 25 |
---SGGGGTS..--TTTTT-SS-S CS zf-CCCH 4 elCrffartG..tCkyGdrCkFaH 25 ++Crffa G +C+ G++C+F+H Araha.13956s0002.1.p 257 VPCRFFAS-GsgYCRNGNNCRFSH 279 68**7777.559************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.896 | 253 | 283 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0036 | 254 | 281 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MSASGRKRVS KWDTKEEDTQ HVSGNDYTGK SGYKDPEHVR FYPDGNGRNG SRRSGPDDDD 60 EHLKSRQHSG EAWPPRSRVS HDDGDAMMGY YDPRKSSEQD ESRQQYVRQS PSRDRSRPRR 120 SGSRSNSRSR SRSQSPLQRV RRDGGGSYDK HKSRARVSPR SGREIDGRYN RAGDYDWEAK 180 NRKTRDTNYY TEDSREQQPV RVGGRTDYSS DFLEENHNSR RETLDPTIRS HRNEFARERE 240 TQRRDVLEGE FHRSSNVPCR FFASGSGYCR NGNNCRFSHH GAPSARGSPE RKPQNEIYSR 300 QDNNNHCGTT ERMRNSHRWN DIERSDAGKS SEVEISRVSK GMSEAKGNNS SWIDDMEMSP 360 DWNYGVKTLK KPVNEEHGGV SQSSQSRVLK DASPAYEHGA AAIAQQDGNR RNIGMFTTVS 420 EKTVASAHHN FSNNLANSAP PVQAFSQNIE NHSAVPYQST PLAVGGSQVL LPAAINLPGG 480 LNSSNLENGN AQNTVSREEL NHISNISASL AQFFGNGQPI PHLQSTLNPK QTMQVPEVYG 540 TKEQSQNDLP SNNSIHTGGV PVVTALPINN SDTEQLRIPE IVISLDGNPK ASSEENREKK 600 TDEEASKEPD GRKTEEEKDT AEDAENVVEE EEDDGALDED SKKEKDPKGM RAFKFALVEI 660 VKELLKPAWK EGGMNKDAYK NIVKKVVDKV TGAVQTGNIP QTQEKIDNYL SASKPKLTKL 720 VQAYVSKVKK S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.13956s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC084414 | 2e-34 | AC084414.2 Arabidopsis thaliana chromosome 1 BAC F27K7 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 2e-34 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002891459.1 | 0.0 | zinc finger CCCH domain-containing protein 38 | ||||
Swissprot | Q9LIH5 | 1e-179 | C3H38_ARATH; Zinc finger CCCH domain-containing protein 38 | ||||
TrEMBL | D7KD69 | 0.0 | D7KD69_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0001_4187 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9160 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-17 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.13956s0002.1.p |