PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1329s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 273aa    MW: 31488.4 Da    PI: 9.0614
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1329s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-05106129123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          +kC++C+ksF++   L +H +t H
  Araha.1329s0005.1.p 106 WKCGYCKKSFNDEKFLDKHFSTrH 129
                          58*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.621106129IPR007087Zinc finger, C2H2
PROSITE patternPS000280108129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRLCESLPV ILLLFALLLL HQSLSQGFEE SESTRLVNEE VEINNAPEIH CSRERSRAAW  60
QIIQDYLTPF VERERYQIPK NCRLHPDNDL YRDQEQHKIH VDVFEWKCGY CKKSFNDEKF  120
LDKHFSTRHY NLLNMTDTKC LADLCGALHC DFVLSSKKPK SKCNPAAVAK NRHLCESVAN  180
SCFPVSQGPS ASRLHEHFLR QFCDAHTCTG KDKPFPRGGK KKSGVFYLAI SILTLMLLPL  240
FYLLVFLYQR EKRSGTQELR RIRKTGKKPK PS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1329s0005.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0639590.0AY063959.1 Arabidopsis thaliana unknown protein (At5g63280) mRNA, complete cds.
GenBankAY0846830.0AY084683.1 Arabidopsis thaliana clone 114951 mRNA, complete sequence.
GenBankAY1338530.0AY133853.1 Arabidopsis thaliana clone U11672 unknown protein (At5g63280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871758.11e-179uncharacterized protein LOC9302618
RefseqXP_020871759.11e-179uncharacterized protein LOC9302618
TrEMBLD7MNZ81e-178D7MNZ8_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.8__2327__AT5G63280.11e-179(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43711618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-167C2H2-like zinc finger protein