PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12821s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 456aa    MW: 49971.9 Da    PI: 7.6315
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12821s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.34.1e-114570126
                          --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                          ++++ C+ff+rtG+C yG++C+++H+
  Araha.12821s0004.1.p 45 PGERDCQFFLRTGQCGYGNTCRYNHP 70
                          5789*********************9 PP
2zf-CCCH35.71.4e-1191115327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++ C +f++tG CkyG++Ck++H++
  Araha.12821s0004.1.p  91 QPDCEYFLKTGACKYGPTCKYHHPK 115
                           789********************96 PP
3zf-CCCH32.71.3e-10136159326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           ++ C+++++tG C++G  CkF+H+
  Araha.12821s0004.1.p 136 EKSCPYYMQTGLCRFGVACKFHHP 159
                           667********************8 PP
4zf-CCCH41.32.5e-13266290327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           +++Crff+ tGtCkyGd Ck++H++
  Araha.12821s0004.1.p 266 RAECRFFMNTGTCKYGDDCKYIHPK 290
                           799********************96 PP
5zf-CCCH32.91.1e-10310336127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++ C +f ++G+Ck+G++CkF H++
  Araha.12821s0004.1.p 310 PGQPACGNFKAYGFCKFGASCKFDHSM 336
                           57899********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4554472IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-64471IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-84670IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-54872IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-45069IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.90688116IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-688115IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-991115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-692116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-494114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61133161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6133161IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-5133160IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8135159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4138158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-7260292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.967263291IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-8264290IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-11266290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-7269291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5306335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873309337IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5309336IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-8311335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4315335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MSETQQQVQN STGSIRSPEK IQDTFRRMKV NEDNMEQSSP YPDRPGERDC QFFLRTGQCG  60
YGNTCRYNHP LTHLPQGVIY YKDQLPERIG QPDCEYFLKT GACKYGPTCK YHHPKDRNGA  120
GPVLFNVLGF PMRQGEKSCP YYMQTGLCRF GVACKFHHPH PQPSNGHSAY AMSSFPSVGF  180
PYASGMTMVP LPPATYGAMA RPQVPQSQAY MPFMVAPSQG LMPPQGWATY MAASNPIYSV  240
KAQLDSSSSA SVPVAVTSHH HSFSERAECR FFMNTGTCKY GDDCKYIHPK ERLLQSPPNI  300
LNPIVLPARP GQPACGNFKA YGFCKFGASC KFDHSMPLNP YNNTGLAMSS LPTPNPYAPP  360
VSTNLRISSP PNRPDSTTLS NGKPAAAETE KQDDSPIQPE KSEVQDSLPP SHSDSTSLPN  420
GKPDAENPSS ETEKQDDNTA QPDSSKVQDA SDKST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12821s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1387440.0AF138744.1 Arabidopsis thaliana zinc finger protein 2 (zfn2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881253.10.0zinc finger CCCH domain-containing protein 26
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLD7LFN30.0D7LFN3_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_40013920.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.10.0zinc finger nuclease 2