PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.12732s0021.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 204aa MW: 23415.9 Da PI: 9.5515 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.6 | 3.4e-11 | 28 | 76 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +E++RR +++s ++eL +llP++ + + l+ + L +A++YIk+Lq Araha.12732s0021.1.p 28 RKTIEKNRRMQMKSLYSELISLLPHQ--SSREPLTLPDELDEATNYIKKLQ 76 5789*********************6..26777*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.47E-5 | 23 | 80 | No hit | No description |
SuperFamily | SSF47459 | 7.95E-10 | 23 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.185 | 23 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-8 | 28 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-7 | 29 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MVYVKQFKKK KTMEPSHSNT GQSRSVDRKT IEKNRRMQMK SLYSELISLL PHQSSREPLT 60 LPDELDEATN YIKKLQVNVE KKRERKRKLV ATTTFEKLNS VGSSSVSSSV DVSVPRRLPK 120 IEIQETGSIF HIFLVTSLEH KFMFCEIVRL LTEELGAEIT HAGYSIVNDA VFHTLHCKVE 180 ECDYGARSQI PERLEKFVNS VHY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 88 | EKKRERKRKL |
2 | 81 | 88 | KRERKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.12732s0021.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493686 | 0.0 | AB493686.1 Arabidopsis thaliana At4g20970 mRNA for hypothetical protein, partial cds, clone: RAAt4g20970. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002869917.2 | 1e-148 | transcription factor bHLH162 isoform X2 | ||||
Swissprot | F4JIJ7 | 1e-117 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | D7MFG5 | 1e-137 | D7MFG5_ARALL; Basic helix-loop-helix family protein | ||||
STRING | fgenesh1_pm.C_scaffold_7001730 | 1e-138 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-111 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.12732s0021.1.p |
Publications ? help Back to Top | |||
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