PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.12478s0004.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 234aa MW: 25491.9 Da PI: 4.6498

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.12478s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.9	7.2e-43	57	156	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++ Araha.12478s0004.1.p 57 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSE 145 7************************************************************************************** PP DUF260 90 lkaelallkee 100 l+a+la+++ e Araha.12478s0004.1.p 146 LQAQLAKTQVE 156 ****99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.323	56	157	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-42	57	154	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MLKMEITGGV ATPTASVVAV AAVAETKTPV TSPSPTSSPP PPPSPQQPTP PPVVLSPCAA 60 CKILRRRCAE KCVLAPYFPP TDPAKFTIAH RVFGASNIIK FLQELPESQR TDAVNSMVYE 120 AGARMRDPVY GCAGAIYHLQ RQVSELQAQL AKTQVELVGM QLQRSSLLEL IYNMEQTKLS 180 AQEQGQQKMS FESSFESGDE FISSPDEESN DLGFLEDNNN NNSSMSWWDP LWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-40	56	158	10	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-40	56	158	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.12478s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473840	0.0	AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880987.2	1e-173	LOB domain-containing protein 11
Swissprot	Q9SK08	1e-141	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	D7LJJ7	1e-169	D7LJJ7_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.4__820__AT2G28500.1	1e-170	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-110	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	Araha.12478s0004.1.p