PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12162s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 254aa    MW: 27795.7 Da    PI: 8.4817
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12162s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.21.3e-13145170126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt++C+ +  tG+C++G +C+FaHg
  Araha.12162s0001.1.p 145 WKTRICNKWETTGYCPFGTNCHFAHG 170
                           8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-1363100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-66598IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9436694IPR000571Zinc finger, CCCH-type
SMARTSM003560.00226693IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-18139174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-11141175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216144172IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-8144171IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10145170IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSHRRDYGSD AVHVRITNDP PPDNLFPNPG DSSVWATEDD YSRVSDDAES PSKKTRSSSS  60
EIGKSFFKTK LCFKFRSGTC PYPATSCHFA HSVEDLRRPP PPNRQETATE ALRNRESFAI  120
SLSSRGYGAA SDGGTVAQTL KPPNWKTRIC NKWETTGYCP FGTNCHFAHG ASELHTFGGG  180
LVEGECKIGT FATPDTKQRG QVDTVTSLVS PGVSSQRTSS AVTQKPNGVR TQRKWKGPDK  240
ISRVYGDWID DIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12162s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0202321e-158BT020232.1 Arabidopsis thaliana At2g35430 gene, complete cds.
GenBankBT0205531e-158BT020553.1 Arabidopsis thaliana At2g35430 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516719.11e-145PREDICTED: zinc finger CCCH domain-containing protein 28-like
SwissprotQ5PP651e-142C3H28_ARATH; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A178VV911e-150A0A178VV91_ARATH; Uncharacterized protein
STRINGBostr.23794s0560.1.p1e-149(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.11e-131C3H family protein