PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11972s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 292aa    MW: 33498.5 Da    PI: 10.5097
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11972s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.7e-1919113199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrs 88 
                           ffkv  + +v+++++  lp +f+ ++ ++ke s +++++ ++g sWev +  +k+++ y+++  GW++Fv++n L   +f++F+++g++
  Araha.11972s0001.1.p  19 FFKVVQSINVSSENMRALPHDFV-RIFSDKELSHKMKIRAQWGSSWEVAI--SKNPRFYFMEkPGWEKFVRDNALGNSEFITFTHKGKM 104
                           89***9*****************.6767789999****************..******666537********************99989 PP

                           EE..EEEEE-S CS
                    B3  89 efelvvkvfrk 99 
                           +f  +v +f++
  Araha.11972s0001.1.p 105 NF--TVNIFKQ 113
                           99..9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-2013115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-1914120IPR015300DNA-binding pseudobarrel domain
CDDcd100175.69E-1718112No hitNo description
PfamPF023622.0E-1719113IPR003340B3 DNA binding domain
PROSITE profilePS5086313.57819114IPR003340B3 DNA binding domain
SMARTSM010191.6E-1919114IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-14197288IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.797200291IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-11203288IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-16203291IPR003340B3 DNA binding domain
CDDcd100175.76E-9214287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MARNADYLRC KEERKNESFF KVVQSINVSS ENMRALPHDF VRIFSDKELS HKMKIRAQWG  60
SSWEVAISKN PRFYFMEKPG WEKFVRDNAL GNSEFITFTH KGKMNFTVNI FKQDGKEMMQ  120
PPKSRAFLAS SSRIKTEQEE DDLKEEVVVS SNRGPKTAAE SNGRKLNLGK KAAKESQNSK  180
RTEKVVKARR DYAGASSSTA AEFTILFKQG YFIFLRIPNT VTKDLMPDEK TIFKIHHPNG  240
KKSWNVVYLV RFGAFSGGWR RLVKEYPLVV GDTCKFTFIK PDELLLVVSK P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11972s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9247410.0AY924741.1 Arabidopsis thaliana hypothetical protein (At2g16210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885930.10.0B3 domain-containing protein At2g16210
SwissprotQ5BPT71e-176Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLD7L1430.0D7L143_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh2_kg.3__3493__AT2G16210.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.11e-179B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]