PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.1159s0006.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 312aa MW: 35005.4 Da PI: 5.9311

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.1159s0006.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	116.6	1.4e-36	67	163	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 +++r+w+eeDe+++L+Gl+df+aktg +++ d++afy fv++si+++vsk+q+++K ++LKkKf ++++k+++g +p+f++++d+++f++ Araha.1159s0006.2.p 67 MSNRIWNEEDELSILKGLVDFRAKTGLESKIDWEAFYGFVRGSIHVQVSKDQVLNKTKKLKKKFLDHMEKINQGIDPHFTRSSDSEAFGF 156 689************************************************************************************* PP DUF573 92 skkiWgs 98 s++iWg+ Araha.1159s0006.2.p 157 SMMIWGK 163 ***95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.3E-27	69	162	IPR007592	Protein of unknown function DUF573

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MPANQSRIVR YISKQFTMAT PTELDFSSPG GAGDDSTPRE RTSKRTASET ATEEEETKKK 60 NKLTSPMSNR IWNEEDELSI LKGLVDFRAK TGLESKIDWE AFYGFVRGSI HVQVSKDQVL 120 NKTKKLKKKF LDHMEKINQG IDPHFTRSSD SEAFGFSMMI WGKNDAEYTN GAMDKTYQNK 180 SQEEMFKKDE EVALIDNGAG KSDFDGKSPP LKAVVVVDKI TTKNGTAGKE SDDDDDVLCA 240 VRDAFENTMV SQGLSDYQKK LQLEKLINLG TGKRRELSNE WKALCVEELK LNIKKLRFSA 300 KLAEAANDDD K*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. May play redundant roles with GEBP and GPL1 in cytokinin responses by regulating the transcript levels of type-A ARR response genes. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893, ECO:0000305\|PubMed:18162594}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.1159s0006.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL163817	1e-121	AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project).
GenBank	CP002688	1e-121	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020876219.1	0.0	GLABROUS1 enhancer-binding protein-like 2 isoform X1
Swissprot	P0DKL0	1e-136	STKLT_ARATH; GLABROUS1 enhancer-binding protein-like 2
TrEMBL	D7M622	0.0	D7M622_ARALL; Predicted protein
STRING	Al_scaffold_0006_1329	0.0	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14280.1	1e-117	DNA-binding storekeeper protein-related

Link Out ? help Back to Top
Phytozome	Araha.1159s0006.2.p