PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G14280.1
Common NameF18O22_70
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 572aa    MW: 64129.6 Da    PI: 7.7884
Description DNA-binding storekeeper protein-related
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G14280.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.86.8e-3861155397
       DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  ++r+w+eeDe+++L+Gl+df+aktg +++ d+dafy +vk+si++kvsk ql++K r+LKkKf ++++k+++g++p+f++++++++f++s++iW+
  AT5G14280.1  61 SNRIWNEEDELSILKGLVDFRAKTGLESKIDWDAFYCYVKGSIHVKVSKCQLMSKTRKLKKKFLDQMEKIDQGNDPHFTRSSETEAFGYSMMIWR 155
                  68********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.3E-2762154IPR007592Protein of unknown function DUF573
SMARTSM007241.6E-43356561IPR006634TRAM/LAG1/CLN8 homology domain
PROSITE profilePS509229.581356566IPR006634TRAM/LAG1/CLN8 homology domain
PfamPF037983.1E-14363553IPR006634TRAM/LAG1/CLN8 homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MATPTELGFS SPGGGGDDSD DNPPQKRTSK RTASETATEE ETKKKKKKKT KHNTKMASPP  60
SNRIWNEEDE LSILKGLVDF RAKTGLESKI DWDAFYCYVK GSIHVKVSKC QLMSKTRKLK  120
KKFLDQMEKI DQGNDPHFTR SSETEAFGYS MMIWRKIDAE YTNGVMDKAH QSESGEEVFE  180
EDEEVALIDK GAAKSGKSPH EAVVVVDKIT TKKNGTAGKE SDDDDDDVLC AVRDAFETTM  240
MSQGLSDYQK KLQLEKLMNL GTGKRRELSN EWKALCVEEL KLNINKLRFS AKLAEAANDD  300
YSSSSSSSIV SWVEIPISMS INIGEISIPD LPIFFSMFLT IYLIAYFIVF RNWKPQIRPE  360
ASSCLISIFH GSPAVFLATR AVFSSSERSF ASANTAAQNT VLDFSVAYFL TDLFHYIVFN  420
PNDVLFIGHH VATLFVFLTC RFLVFHGACA ILGLLILAEV TSACQNAWTL AGARKNDPES  480
RLAVKVYDLL SPPFYAFYSI VRGVLGPLFF GKMVAFYARG GAHGVIPNWL WISWAIVVGI  540
AITVSILWIW NLWIELFSER KANKIRVDKK IR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14248KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.437130.0inflorescence| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184173370.0
Expression AtlasAT5G14280-
AtGenExpressAT5G14280-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia. Detected in the vascular tissues of cotyledons and leaves, in hydathodes and in the septun of siliques, but not in roots. {ECO:0000269|PubMed:18162594}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May play redundant roles with GEBP and GPL1 in cytokinin responses by regulating the transcript levels of type-A ARR response genes. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G14280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G14280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175480.0AK117548.1 Arabidopsis thaliana At5g14280 mRNA for unknown protein, complete cds, clone: RAFL17-19-N04.
GenBankAL1638170.0AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project).
GenBankAY0756160.0AY075616.1 Arabidopsis thaliana AT5g14280/F18O22_70 mRNA sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001318559.10.0DNA-binding storekeeper-like protein
SwissprotP0DKL00.0STKLT_ARATH; GLABROUS1 enhancer-binding protein-like 2
TrEMBLD7M6220.0D7M622_ARALL; Predicted protein
STRINGAT5G14280.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM187655
Publications ? help Back to Top
  1. Curaba J,Herzog M,Vachon G
    GeBP, the first member of a new gene family in Arabidopsis, encodes a nuclear protein with DNA-binding activity and is regulated by KNAT1.
    Plant J., 2003. 33(2): p. 305-17
    [PMID:12535344]
  2. Marshall SD,Putterill JJ,Plummer KM,Newcomb RD
    The carboxylesterase gene family from Arabidopsis thaliana.
    J. Mol. Evol., 2003. 57(5): p. 487-500
    [PMID:14738307]
  3. Chevalier F, et al.
    GeBP and GeBP-like proteins are noncanonical leucine-zipper transcription factors that regulate cytokinin response in Arabidopsis.
    Plant Physiol., 2008. 146(3): p. 1142-54
    [PMID:18162594]