PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1159s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 459aa    MW: 51585.3 Da    PI: 8.5349
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1159s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573115.62.9e-3650146298
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          +++r+w+eeDe+++L+Gl+df+aktg +++ d++afy fv++si+++vsk+q+++K ++LKkKf ++++k+++g +p+f++++d+++f++
  Araha.1159s0006.1.p  50 MSNRIWNEEDELSILKGLVDFRAKTGLESKIDWEAFYGFVRGSIHVQVSKDQVLNKTKKLKKKFLDHMEKINQGIDPHFTRSSDSEAFGF 139
                          689*************************************************************************************** PP

               DUF573  92 skkiWgs 98 
                          s++iWg+
  Araha.1159s0006.1.p 140 SMMIWGK 146
                          *****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.7E-2752145IPR007592Protein of unknown function DUF573
SMARTSM007242.0E-9259453IPR006634TRAM/LAG1/CLN8 homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MATPTELDFS SPGGAGDDST PRERTSKRTA SETATEEEET KKKNKLTSPM SNRIWNEEDE  60
LSILKGLVDF RAKTGLESKI DWEAFYGFVR GSIHVQVSKD QVLNKTKKLK KKFLDHMEKI  120
NQGIDPHFTR SSDSEAFGFS MMIWGKNDAE YTNGAMDKTY QNKSQEEMFK KDEEVALIDN  180
GAGKSDFDGK SPPLKAVVVV DKITTKNGTA GKESDDDDDV LCAVRDAFEN TMVSQGLSDY  240
QKKLQLEKLI NLGTGKRREL SNEWKALYSS SSSSIVVRVE IPISMSITIG EFSIPDLPLF  300
FSMFLTIYLI AYFIVFRNWK PQIPTLFVFL TCRFLVFHGA CAILGLLILA EVTSACQNAW  360
TLAGARKNDP ESRLAVKVYD LLSPPFYAFY SIVRGVLGPL FFGKMVAFYA RGGAHGVIPN  420
WLWISWAIVV GTAITVSILW IWNLWIELFR QRKAKKIR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May play redundant roles with GEBP and GPL1 in cytokinin responses by regulating the transcript levels of type-A ARR response genes. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1159s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175480.0AK117548.1 Arabidopsis thaliana At5g14280 mRNA for unknown protein, complete cds, clone: RAFL17-19-N04.
GenBankAL1638170.0AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project).
GenBankAY0756160.0AY075616.1 Arabidopsis thaliana AT5g14280/F18O22_70 mRNA sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876219.11e-166GLABROUS1 enhancer-binding protein-like 2 isoform X1
SwissprotP0DKL01e-114STKLT_ARATH; GLABROUS1 enhancer-binding protein-like 2
TrEMBLD7M6220.0D7M622_ARALL; Predicted protein
STRINGAl_scaffold_0006_13290.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM187655
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14280.11e-124DNA-binding storekeeper protein-related