PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1153s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 293aa    MW: 33386.7 Da    PI: 4.8802
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1153s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1859112356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ +q+++Le+ Fe ++++  e++++LA++lgL+ rqV vWFqNrRa++k
  Araha.1153s0001.1.p  59 KKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWK 112
                          5568999**********************************************9 PP
2HD-ZIP_I/II129.41.5e-4158150193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrl+ +qvk+LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++++L +e
  Araha.1153s0001.1.p  58 EKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKSQYDSLRHNFDSLRRDNDSLLQE 147
                          69*************************************************************************************999 PP

          HD-ZIP_I/II  91 lke 93 
                          +++
  Araha.1153s0001.1.p 148 ISK 150
                          875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.0E-1848116IPR009057Homeodomain-like
PROSITE profilePS5007116.8654114IPR001356Homeobox domain
SMARTSM003894.3E-1757118IPR001356Homeobox domain
CDDcd000862.41E-1659115No hitNo description
PfamPF000467.0E-1659112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.7E-2061121IPR009057Homeodomain-like
PRINTSPR000316.6E-68594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000316.6E-694110IPR000047Helix-turn-helix motif
PfamPF021836.3E-17114155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED TTLMEEYSGN HHHMGLSEKK  60
RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV AVWFQNRRAR WKTKQLEKDY  120
GVLKSQYDSL RHNFDSLRRD NDSLLQEISK IKAKINGEED NNKVTTESVK EEEFHKTDAI  180
PSSPLQFLEH SSGFNYRRSF TDLRDLLPNS TVFEAGSSDS CDSCAVLNDE TSSDNGRLTP  240
PVTVTGGSFL QFVKTEQTED HDDFLSGEEA CGFFSDEQPP SLHWYSASDH WT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15863KKRRLK
2106114RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1153s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3706200.0AF370620.1 Arabidopsis thaliana homeodomain-like protein (T5J17.230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874628.10.0homeobox-leucine zipper protein ATHB-16 isoform X1
SwissprotQ940J10.0ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLD7M9I70.0D7M9I7_ARALL; ATHB16
STRINGfgenesh2_kg.7__226__AT4G40060.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.10.0homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]