PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11265s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 385aa    MW: 44961.5 Da    PI: 10.9386
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11265s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-1466109246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           + WT+ Ed++l ++v+ +G ++W++ a++m+ gRt+k c+ rw++
  Araha.11265s0005.1.p  66 KFWTPSEDLKLTELVATYGARRWNRLAEKMQ-GRTGKGCRIRWLN 109
                           67*****************************.***********98 PP
2Myb_DNA-binding36.51.1e-11118160246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            ++T eEd +++ a ++lG+  W++Ia+ +  +Rt+  +++ w+ 
  Araha.11265s0005.1.p 118 TAFTDEEDAKILSAQRELGNQ-WTKIAKLLH-RRTDIAVRNQWRH 160
                           689****************99.*********.***********96 PP
3Myb_DNA-binding42.61.4e-13237280246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           + WT  Ed++l ++v+ +G+++W+ Ia++m+  +t+k+c+ rw +
  Araha.11265s0005.1.p 237 KYWTRSEDLKLTRLVATYGPRRWNHIAEKMQ-VKTGKSCRFRWVN 280
                           67*****************************.89*********88 PP
4Myb_DNA-binding45.12.4e-14289333248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +++ eE+ +++ a ++lG++ W++Ia+ +  +Rt++ +k++w++++
  Araha.11265s0005.1.p 289 TAFSDEEEAKILSAQRELGNK-WSKIAKLLH-RRTANAVKNHWHQLM 333
                           689******************.*********.************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.56760111IPR017930Myb domain
SMARTSM007172.5E-1264113IPR001005SANT/Myb domain
SuperFamilySSF466892.49E-2465158IPR009057Homeodomain-like
CDDcd001675.59E-1068111No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2668118IPR009057Homeodomain-like
PfamPF002492.4E-1368109IPR001005SANT/Myb domain
PROSITE profilePS5129419.553112166IPR017930Myb domain
SMARTSM007172.2E-11116164IPR001005SANT/Myb domain
PfamPF002495.8E-10117159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-17119162IPR009057Homeodomain-like
CDDcd001671.03E-6119161No hitNo description
PROSITE profilePS5129413.551231282IPR017930Myb domain
SMARTSM007173.6E-14235284IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-24236334IPR009057Homeodomain-like
PfamPF139212.2E-14239298No hitNo description
Gene3DG3DSA:1.10.10.602.0E-23239289IPR009057Homeodomain-like
CDDcd001672.87E-10239280No hitNo description
PROSITE profilePS5129423.749283337IPR017930Myb domain
SMARTSM007175.8E-13287335IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-19290338IPR009057Homeodomain-like
CDDcd001671.06E-7290333No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGQPSGYQAF LTSLDIIVII KLTRSYRDSS VNPMESTFQA FKRPSSNGRE NNALVRRMHH  60
EKQEKKFWTP SEDLKLTELV ATYGARRWNR LAEKMQGRTG KGCRIRWLNK LDPRINKTAF  120
TDEEDAKILS AQRELGNQWT KIAKLLHRRT DIAVRNQWRH LNTKNKGHWK PSKDRISSSK  180
CRFQYSELEV HCRKYARKNS VSPMESTLQA FKRLSSNDFG GNNALVRGMH HERYKKKYWT  240
RSEDLKLTRL VATYGPRRWN HIAEKMQVKT GKSCRFRWVN QLDPRINKTA FSDEEEAKIL  300
SAQRELGNKW SKIAKLLHRR TANAVKNHWH QLMRKTLKKQ TKEETNNLKP PSSLPSEGKD  360
TMEASYFKTN VPLKYIDFLG VGDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-27683377105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11265s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874175.12e-79transcription factor MYB105
SwissprotQ9SEZ47e-35MY105_ARATH; Transcription factor MYB105
TrEMBLD7MJD82e-90D7MJD8_ARALL; Uncharacterized protein
STRINGscaffold_704015.13e-91(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39700.14e-46myb domain protein 89
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]