PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.11243s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 171aa MW: 20081.3 Da PI: 10.1212 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 77.3 | 1.9e-24 | 16 | 68 | 3 | 55 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rWt +L F ++ve LGG+ kAtPk il++m+v Lt++hvkSHLQ+YR Araha.11243s0002.1.p 16 PMRWTDDLDLLFTQVVELLGGERKATPKPILKCMDVRNLTISHVKSHLQMYRK 68 69**************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-23 | 11 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.021 | 11 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.91E-14 | 13 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.4E-8 | 17 | 67 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 8.4E-22 | 17 | 70 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MKKTIVRCYI RSKVPPMRWT DDLDLLFTQV VELLGGERKA TPKPILKCMD VRNLTISHVK 60 SHLQMYRKKK KEESIKEKRL MLEMNRRQSQ QYLQIYERAR DATQFIQNQQ RPQLDIIEKI 120 TPVLESSNKF LYQFSRERLN ENKNNDVVVA GGSAIGEEEL SLELTLGHKY * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 71 | RKKKKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.11243s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002874800.1 | 7e-99 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | D7M1R3 | 2e-97 | D7M1R3_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_6002971 | 3e-98 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04580.1 | 2e-63 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.11243s0002.1.p |