PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.10571s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 250aa MW: 27554.1 Da PI: 9.5553 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.8 | 3.5e-31 | 171 | 228 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp ++++tYegeH+h+ Araha.10571s0003.1.p 171 DEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDPAMLIVTYEGEHRHN 228 9************************8766****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 7.8E-18 | 118 | 167 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 5.0E-33 | 157 | 229 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.24 | 164 | 230 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-27 | 167 | 229 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-37 | 169 | 229 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-27 | 171 | 227 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MAVDLMRFPK MDDQTAIQEA ASQGLQSMEH LIRVLSNRPE QQHNNVDCSE ITDFTVSKFK 60 TLEFSKENFS VSLNSSFMSS GITGDGSVSN GKIFLASAPS QPVNSSGKPP LAAGHPYRKR 120 CLEHEHSESF SGKVSGSGYG KCHCKKSRKN RMKRTVRVPA ISAKIADIPP DEYSWRKYGQ 180 KPIKGSPHPR GYYKCSTFRG CPARKHVERA LDDPAMLIVT YEGEHRHNQS AMQENISSSG 240 VNDLVFASA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-21 | 157 | 228 | 2 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.10571s0003.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY150394 | 0.0 | AY150394.1 Arabidopsis thaliana putative DNA-binding protein (At4g31550) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002867294.1 | 1e-139 | probable WRKY transcription factor 11 isoform X1 | ||||
Swissprot | Q9SV15 | 1e-137 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A078J443 | 1e-138 | A0A078J443_BRANA; BnaA01g34790D protein | ||||
TrEMBL | D7MB53 | 1e-138 | D7MB53_ARALL; WRKY transcription factor 11 | ||||
STRING | scaffold_701056.1 | 1e-138 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2508 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-127 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Araha.10571s0003.1.p |