PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10539s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 746aa    MW: 82296.9 Da    PI: 6.1182
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10539s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-085799347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  Araha.10539s0007.1.p 57 AWTHQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 99
                          6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1049104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-552102IPR009057Homeodomain-like
PROSITE profilePS5129313.5253104IPR017884SANT domain
SMARTSM007175.1E-654102IPR001005SANT/Myb domain
CDDcd001671.22E-557100No hitNo description
PfamPF002493.2E-65799IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MLKQFAHYCE MQAELKPEGP NGEGRLSNQN SNPNLLSSAS INVAQFPAKK PTRQWAAWTH  60
QEEESFFTAL RQVGKNFEKI TSRVQSKNKD QVRHYYYRLV RRMNKLLGPE LSLDAKNPKD  120
TNAAMLRWWS LLEKYSCKAS KLHLKPRRFK LFIEALEHQL LKDRRKSIRK RACQGENLSS  180
ASLGNISSHS RERGLDNRPF KLILSDSQNV KKLGPGRAST KNGESLGVNL GDEKEDTAFG  240
RGGRQRRKQA GYRKWEKAAI DGVSLVADAA EHLERTSIDK DMDDQTELGP SRYLTGKSPL  300
SLCSSGDVLL SDTNMQFSAK LKLQLFPIDE CTRRSLEMDK HNPHLELTLS NRKKISSVLE  360
HLNRKWGSAS CATGELLLFP YNARKETVTC HQRWTHDSFL SAAEVHSMVG SPSVFRLRYG  420
WFVHDASGSI ISQFPTSDPC PSLEDDMNVD GVNEVNMLLT ESGPLSVHST AEQATSVEPS  480
QGLVCASGEI HDHPAESRDD YEPASTTITP LEHLSSGNAQ SAGEWADSLT NISIGDLLSE  540
VPDDIDSDGV DPPATEGSHY LLRDVPFASD SFDAAIAAHI LRHQNKPSAL LPLTSGSSSL  600
WDDEETRDAF SFQKNRLADS TEVASVASPK GVGRVNGEPS QLVEALSGDE GSCNPSDHGD  660
PMEEGPTDPH RMDSPGKTPC GLVDVYWPDS LGPLDLDIRS SKYTEDLILS ESLGGLSRLI  720
ATSLDAFQNC SLFGFDNKKD KSNMV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10539s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0640680.0AY064068.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
GenBankAY0963760.0AY096376.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884578.10.0TSL-kinase interacting protein 1 isoform X1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLD7LJ990.0D7LJ99_ARALL; Tsl-kinase interacting protein 1
STRINGscaffold_402323.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1