PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1048s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 182aa MW: 20708.9 Da PI: 5.7422 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.3 | 9.9e-07 | 112 | 138 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++e+C+f+++++ C G+ C+++H+p Araha.1048s0002.1.p 112 PGEENCPFYLKNHLCGWGSECCYNHPP 138 589**********************97 PP | |||||||
2 | zf-CCCH | 27.9 | 4e-09 | 151 | 172 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+ff + G Ck+G++C+F H++ Araha.1048s0002.1.p 151 DCKFFKA-GSCKRGSNCQFYHPK 172 5997777.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.5 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.366 | 111 | 139 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-4 | 113 | 138 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-5 | 147 | 172 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 150 | 171 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.502 | 151 | 173 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-6 | 151 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-5 | 152 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MANVSFTLDS QGQTQELRPS GLGSRSDERT GRRQGKEPEK MEKEELGFGV SEEGEIPDQQ 60 ESDADSDVRD YLKQQQRART PDRRGSESKL MLDERTQGRS ESVLSSAYPI RPGEENCPFY 120 LKNHLCGWGS ECCYNHPPLH EIPYRIGNKL DCKFFKAGSC KRGSNCQFYH PKERDGAEPM 180 LQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1048s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020867243.1 | 1e-109 | LOW QUALITY PROTEIN: putative zinc finger CCCH domain-containing protein 10 | ||||
Swissprot | Q9C7P1 | 5e-80 | C3H10_ARATH; Putative zinc finger CCCH domain-containing protein 10 | ||||
TrEMBL | D7KDV6 | 1e-108 | D7KDV6_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_1002393 | 1e-109 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17915 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29600.1 | 2e-82 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.1048s0002.1.p |