PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10429s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 410aa    MW: 44557.5 Da    PI: 9.2808
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10429s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53e-10117141126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +k++ C+++ + G Ck+G++C+F H+
  Araha.10429s0002.1.p 117 PKRSVCKYWKA-GNCKRGEQCQFLHS 141
                           79*********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-7116142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.948116143IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7117141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7117141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-8118141IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.58E-41141406IPR017986WD40-repeat-containing domain
SMARTSM003208.3E-4147186IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.9E-39149407IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029420.646154324IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.115154195IPR001680WD40 repeat
PfamPF117157.1E-5169202No hitNo description
PROSITE patternPS006780173187IPR019775WD40 repeat, conserved site
PRINTSPR003201.3E-6173187IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0015237275IPR001680WD40 repeat
PfamPF004001.4E-4239275IPR001680WD40 repeat
PROSITE profilePS500829.64259284IPR001680WD40 repeat
PROSITE patternPS006780262276IPR019775WD40 repeat, conserved site
PRINTSPR003201.3E-6262276IPR020472G-protein beta WD-40 repeat
SMARTSM003203.7E-5278315IPR001680WD40 repeat
PfamPF004000.0018280314IPR001680WD40 repeat
PRINTSPR003201.3E-6302316IPR020472G-protein beta WD-40 repeat
SMARTSM0032078321362IPR001680WD40 repeat
SMARTSM003205.5365402IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDYKAPRRYS HGRNFGVARQ QDFAADIVTR RPYAPYNNGM KKGPNNLSRN LVWTSKEYKA  60
PDGDRPRKNA ANGSTKPPVL GTGHCVSNQA KNNAVYGPRS SSISDTRGWG SRDNSSPKRS  120
VCKYWKAGNC KRGEQCQFLH SWSCFPGLAM VAALEGHKKD LKGIALPQGS DKLFSVSGDG  180
TLRIWDCNSG QCVHSINLQA EAGSLISEGP WVFLGLPNAV KSGSILVWKA TDSESDPFKY  240
LTSLEGHHSG EVTCFVVGGH LLYSGSVNRT IKVWDLNTLQ CIMTLKQHTG TVTSLLCWDK  300
CLISSSLDGT IKVWACSENG SLKVVQTRKQ EQSVHALCGM HDAEAKPIIF CSYQNGTVGI  360
FDLPSFEERG KMFSTQTIGT LTIGPEGLLF SGDKGGNLRV WSLAAGNKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6o_A4e-181424098320Ika8
6g6o_B4e-181424098320Ika8
6g6o_C4e-181424098320Ika8
6g6p_A4e-181424098320Ika8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10429s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520650.0AJ252065.1 Arabidopsis thaliana partial mRNA for zfwd3 protein (zfwd3 gene).
GenBankBT0304000.0BT030400.1 Arabidopsis thaliana At5g40880 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872138.10.0zinc finger CCCH domain-containing protein 59 isoform X1
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLD7MJ150.0D7MJ15_ARALL; WD-40 repeat family protein
STRINGfgenesh2_kg.7__3321__AT5G40880.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein