PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10391s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 236aa    MW: 26956 Da    PI: 9.5493
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10391s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.7e-083282348
                          -HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                          +W+++ar  g++R +k+c++rw +yl
  Araha.10391s0001.1.p  3 RWNSVARLAGLKRNGKSCRLRWVNYL 28
                          5*********9*************97 PP
2Myb_DNA-binding52.98.5e-173478147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Araha.10391s0001.1.p 34 RGQITPHEETIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 78
                          7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.207128IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-9131IPR009057Homeodomain-like
PfamPF002491.2E-5228IPR001005SANT/Myb domain
SuperFamilySSF466894.9E-221485IPR009057Homeodomain-like
PROSITE profilePS5129424.3892983IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-243282IPR009057Homeodomain-like
SMARTSM007174.7E-153381IPR001005SANT/Myb domain
PfamPF002494.0E-143478IPR001005SANT/Myb domain
CDDcd001672.94E-113879No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
EGRWNSVARL AGLKRNGKSC RLRWVNYLRP DLKRGQITPH EETIILELHA KWGNRWSTIA  60
RSLPGRTDNE IKNYWRTHFK KKTKSPTNNA EKTKNRILKR QQFQQQRQME LQQEQQLLQF  120
NQIDMKKIMS LLDDDNNNGD NNTFSSSSSG SSGEGGAFYV PHQITHSTTT YGGDPNSNGY  180
NYPVVPVTIP EDNVNEDNAI WDGLWNLDFE GQGSFGGASC APRKQYFQNM VIPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-1738326105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-1738326105C-Myb DNA-Binding Domain
1msf_C3e-1738326105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10391s0001.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5502980.0AY550298.1 Arabidopsis thaliana MYB transcription factor (At3g24310) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885636.11e-128transcription factor WER
TrEMBLD7L5171e-127D7L517_ARALL; Uncharacterized protein
STRINGCagra.0454s0003.1.p1e-128(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-123myb domain protein 305