PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.10168s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | DBB | ||||||||
Protein Properties | Length: 327aa MW: 36033 Da PI: 6.4985 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.6 | 5.2e-08 | 3 | 34 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 +C+ ++++e++ fC+ ++ lC C + H+ Araha.10168s0002.1.p 3 IRCDVCDKEEASVFCTADEASLCGGCDHQVHH 34 58***************************974 PP | |||||||
2 | zf-B_box | 30.9 | 5.5e-10 | 57 | 94 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ +++k++ lfC++++ lC+dC +++H Ht Araha.10168s0002.1.p 57 SPLCDICQDKKALLFCQQDRAILCKDCDSSIHAAneHT 94 689*****************************556776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.651 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.4E-6 | 3 | 34 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.72E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.5E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 6.87E-5 | 49 | 93 | No hit | No description |
PROSITE profile | PS50119 | 10.452 | 55 | 102 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.5E-15 | 55 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.8E-8 | 57 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.75E-11 | 59 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNNSSPLC 60 DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF LLTGVKLSAT SSVYKPTSES 120 SSSSSNQDLS VPGSSISNPP LKKPFSVPPQ SNNNSKIQPF SKISGGDAAV NQWGSTSTIS 180 EYLIDTLPGW HVEDFLDSSL PTFGFTKSGD DDGVLPYMEA EDDNTKRNNN NNNTVSLPSK 240 NLGIWVPQIP QTLPSSYPNQ YFSQDNNIQF GMYNKETSPE VVSFAPLQNM KQQGQNNKRW 300 YDDGGFTVPQ ITPPPLSSNK KFRSFW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.10168s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493536 | 0.0 | AB493536.1 Arabidopsis thaliana At1g75540 mRNA for hypothetical protein, partial cds, clone: RAAt1g75540. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_177686.1 | 0.0 | salt tolerance homolog2 | ||||
Swissprot | Q9LQZ7 | 0.0 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | D7KSQ7 | 0.0 | D7KSQ7_ARALL; Zinc finger (B-box type) family protein | ||||
STRING | AT1G75540.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5400 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 0.0 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Araha.10168s0002.1.p |