PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.0898s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 943aa MW: 107332 Da PI: 10.0102 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.3 | 7.5e-15 | 15 | 100 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ffk l ++++ l +p f+++h +gk+ ++k +l++ s ++W vk+ ++ lt+GW++F+ a++L+ gD+vvF+++g++ Araha.0898s0012.1.p 15 FFKPL--LEGFRTH-LNIPVAFFSKHvEGKNDQNKIAKLRSdASEKTWLVKM--DGLN----LTDGWEDFAFAHDLRIGDIVVFRHEGEM 95 56666..6667777.9***********777789999999997889*******..5555....***********************99988 PP EE..EEE CS B3 89 efelvvk 95 f +v+ Araha.0898s0012.1.p 96 VF--HVT 100 88..665 PP | |||||||
2 | B3 | 64.9 | 1.2e-20 | 162 | 249 | 10 | 99 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l+++rl++p +fa+ +g++k +sk++ l +++grsW++ l+++k++ ++++++GW++F++ang+ +g +Fkl++ +++ +v++++++ Araha.0898s0012.1.p 162 GLRNDRLYIPLSFARLNGLNKINSKKIYLHNKEGRSWKLALKHDKSGMHTYIQTGWRSFCDANGISQGQY-TFKLVR-KSAPPVIRLCST 249 5789*****************************************************************6.***998.89999**99986 PP | |||||||
3 | B3 | 67.8 | 1.5e-21 | 272 | 360 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++++l++++l lp++f+++++++k++s +++l++e+g +W l + ++ ++ltkGW +F++ n++k+gD++ Fkl+g + +++v++ Araha.0898s0012.1.p 272 VSPSSLRNNQLFLPRNFVSSNSLEKRCS-EIVLKNEQGIKWPSVL--KHYKTVTYLTKGWTSFCQVNKIKAGDSFKFKLVG-TWTKPVLS 357 678999999***************9998.****************..999999**************************99.78888999 PP EE- CS B3 96 vfr 98 ++ Araha.0898s0012.1.p 358 LCP 360 886 PP | |||||||
4 | B3 | 57.6 | 2.4e-18 | 465 | 554 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++++l +++l+lp++f++++g++k++s +++l++e+g++ ++ l++ ++ ++l+kGW +F++ n++++gD++ Fkl+g + ++v+ Araha.0898s0012.1.p 465 VNPSSLYKDQLYLPRNFVSSNGLDKRCS-EIVLKNERGEKRTLVLKH--FKQNlTFLKKGWTSFCQVNRINAGDSFKFKLVG-TWNKPVL 550 6788999999***************998.****************44..4434489************************99.7777888 PP EEE- CS B3 95 kvfr 98 +++ Araha.0898s0012.1.p 551 TLCP 554 8886 PP | |||||||
5 | B3 | 68.4 | 9.8e-22 | 644 | 731 | 5 | 93 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +++++l+ +rl+lp +fa+++g++k ++kt++l +e+grsW+++l+y+k + +++ + GWk+F++ang+ + ++Fkl++ + + +v Araha.0898s0012.1.p 644 NVTASSLNCDRLYLPLSFARSNGLDKMSGKTIVLINEEGRSWKLTLKYNKAGMQTYVRPGWKRFCDANGMSQDQQFTFKLVQ-KHEPPV 731 578899999**********************************************************************998.444445 PP | |||||||
6 | B3 | 63.7 | 2.8e-20 | 756 | 846 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++++ +++ l+l k+f++++g+ k + k+++l++e+gr+W++ l++ k+ +++++GW +F++ ngLk+gD++ Fkl+g +e+ +v++ Araha.0898s0012.1.p 756 VTASSINKDKLYLRKSFVSSNGLYKGC-KKIVLKNEWGRQWNLVLKHYKSHFFTLIKRGWASFCQGNGLKDGDSFKFKLVG-TEEMPVLS 843 5677888899***********999866.7****************777777669999**********************99.55558888 PP EE- CS B3 96 vfr 98 ++ Araha.0898s0012.1.p 844 LCP 846 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-20 | 11 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-18 | 11 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.547 | 12 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.85E-14 | 13 | 100 | No hit | No description |
SMART | SM01019 | 2.3E-21 | 15 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-9 | 22 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-15 | 148 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-15 | 149 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.042 | 153 | 250 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.9E-24 | 154 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-19 | 162 | 249 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.80E-13 | 163 | 248 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-21 | 259 | 361 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-20 | 263 | 364 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.029 | 267 | 361 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.68E-14 | 267 | 360 | No hit | No description |
SMART | SM01019 | 7.6E-28 | 268 | 362 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-20 | 272 | 360 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-18 | 454 | 555 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-17 | 457 | 557 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.75E-12 | 460 | 554 | No hit | No description |
PROSITE profile | PS50863 | 12.449 | 460 | 555 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-27 | 461 | 556 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-17 | 465 | 554 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-20 | 633 | 732 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.02E-18 | 634 | 732 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.099 | 640 | 738 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.22E-14 | 640 | 726 | No hit | No description |
SMART | SM01019 | 1.7E-27 | 641 | 738 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-19 | 643 | 733 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-20 | 743 | 846 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-19 | 751 | 849 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.198 | 751 | 847 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.8E-25 | 752 | 848 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-19 | 756 | 846 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.39E-18 | 756 | 846 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 943 aa Download sequence Send to blast |
MADQSLLHSP IKPHFFKPLL EGFRTHLNIP VAFFSKHVEG KNDQNKIAKL RSDASEKTWL 60 VKMDGLNLTD GWEDFAFAHD LRIGDIVVFR HEGEMVFHVT ALGPSCCEIQ YYTSSHNIND 120 DDRNDQTNIA SRNSSRVKKN ARKKVEPSSD HSRFMAKVSV WGLRNDRLYI PLSFARLNGL 180 NKINSKKIYL HNKEGRSWKL ALKHDKSGMH TYIQTGWRSF CDANGISQGQ YTFKLVRKSA 240 PPVIRLCSTK AKPKQRSQSD SSSDHSCFEG SVSPSSLRNN QLFLPRNFVS SNSLEKRCSE 300 IVLKNEQGIK WPSVLKHYKT VTYLTKGWTS FCQVNKIKAG DSFKFKLVGT WTKPVLSLCP 360 TNSNHDKTPL ECPNDVKSLS SNPRSGDDSS KSKEIEEENI EDKNISKTCL EIKKRKYWSR 420 CRASVENMDD DQTNIGNSSR KKRVKKNPRK NVESSSYHSS FEGSVNPSSL YKDQLYLPRN 480 FVSSNGLDKR CSEIVLKNER GEKRTLVLKH FKQNLTFLKK GWTSFCQVNR INAGDSFKFK 540 LVGTWNKPVL TLCPTESNHH KTPLECSEGN KSEESEEEGI EDKNTSQDCL EVKKRKYWSR 600 CRASAENIDD DQTNIGNSSR KKRVKKNPIK KAESSSDHSS FVANVTASSL NCDRLYLPLS 660 FARSNGLDKM SGKTIVLINE EGRSWKLTLK YNKAGMQTYV RPGWKRFCDA NGMSQDQQFT 720 FKLVQKHEPP VMRLYLAEHR PKSESSSHGS YLVGSVTASS INKDKLYLRK SFVSSNGLYK 780 GCKKIVLKNE WGRQWNLVLK HYKSHFFTLI KRGWASFCQG NGLKDGDSFK FKLVGTEEMP 840 VLSLCPAESS REKTPLECPE GSDDVKSLSS NPSSGDDSSK SEESEEESLE DKNISQDCLE 900 IKKRKYFSSY RASSSYTRNR FVTLTLTRSA FQTYKLVSFF NI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.0898s0012.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT002947 | 0.0 | BT002947.1 Arabidopsis thaliana clone RAFL15-02-G15 (R20317) unknown protein (At1g26680) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002893387.1 | 0.0 | B3 domain-containing protein REM17 isoform X1 | ||||
Swissprot | Q84WP3 | 0.0 | REM17_ARATH; B3 domain-containing protein REM17 | ||||
TrEMBL | D7KQM9 | 0.0 | D7KQM9_ARALL; T24P13.6 | ||||
STRING | scaffold_102864.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5781 | 16 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 0.0 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.0898s0012.1.p |
Publications ? help Back to Top | |||
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