PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0783s0019.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 715aa    MW: 80575.6 Da    PI: 7.5112
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0783s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-192580156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         +++ +++t++q+++Le++F+++++p++ +r++L +kl+L+ +q+k+WFqN+R++ k
  Araha.0783s0019.1.p 25 KKSYHRHTNHQIHRLEAYFKECPHPDELQRRQLGEKLNLKPKQIKFWFQNKRTQAK 80
                         688899***********************************************988 PP
2START99.84.9e-322384572206
                          HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
                START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                           ae+a +e+ ++++ e+ +W+kss         ++++   +++ +   + + e +++++vv m++ +l   +l++  +W + ++    +a
  Araha.0783s0019.1.p 238 TAEKAVAEVTSLIQMEKSMWKKSSiddrlvidPGLYENFFTKINTN--G-RPESSKEVVVVQMDARNLIDMFLNVE-KWARLFPtivsEA 323
                          578999*******************998877555555555555533..3.6799**********************.9999999999999 PP

                          EEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
                START  80 etlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                          +t+ v++s      ++  +++ +l  lsplvp R+fv++R+++q+++ +w+i+dvS   ++   e +s + ++++pSg li+ ++ g sk
  Araha.0783s0019.1.p 324 KTIHVLDSIdhrgqTFSRVIYEQLHILSPLVPpREFVILRTCQQMEENVWMIADVSCHLPNIEFEFASPI-CTKRPSGVLIQALPHGLSK 412
                          9999999977999999999****************************************99988644444.69***************** PP

                          EEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 164 vtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                          vtwvehv ++++ +  h l+r l+  g   ga++w+ tl+r ce+
  Araha.0783s0019.1.p 413 VTWVEHVVVNDNKVrpHKLYRDLLYGGFGYGARRWTVTLERMCER 457
                          *********9998888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.3E-18883IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-192089IPR009057Homeodomain-like
PROSITE profilePS5007116.522282IPR001356Homeobox domain
SMARTSM003896.5E-182486IPR001356Homeobox domain
CDDcd000861.07E-162583No hitNo description
PfamPF000466.6E-172580IPR001356Homeobox domain
PROSITE profilePS5084840.016228460IPR002913START domain
SuperFamilySSF559611.1E-26231458No hitNo description
CDDcd088758.24E-81235456No hitNo description
SMARTSM002342.2E-13237457IPR002913START domain
PfamPF018521.3E-26238457IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-7288418IPR023393START-like domain
SuperFamilySSF559611.26E-10480699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MDSSRDDSSS DERGISMDAN NSKDKKSYHR HTNHQIHRLE AYFKECPHPD ELQRRQLGEK  60
LNLKPKQIKF WFQNKRTQAK THNEKADNAI LRAENMKIRR ENEAMEDALK NVVCPPCGGR  120
GPGREEQLRH LQKLRAQNAF LKEKYEILSN YLNQHEGHSM PNVDALPYHH GPSTYASTSN  180
HRPALYGSSS NRLPEPSNLL RGPYARGNIN SPPQPRKSLL EQHFQPLSQL EKIAMFETAE  240
KAVAEVTSLI QMEKSMWKKS SIDDRLVIDP GLYENFFTKI NTNGRPESSK EVVVVQMDAR  300
NLIDMFLNVE KWARLFPTIV SEAKTIHVLD SIDHRGQTFS RVIYEQLHIL SPLVPPREFV  360
ILRTCQQMEE NVWMIADVSC HLPNIEFEFA SPICTKRPSG VLIQALPHGL SKVTWVEHVV  420
VNDNKVRPHK LYRDLLYGGF GYGARRWTVT LERMCERLFL SASVPDFPNN ENPGVVQTIE  480
GKRSVMQLGE RMLRNFAWIM KMTDKQDFSQ QSETNNSGVR ISVRINNEAG QPPGLIVCAG  540
SSLSLPLPPI HVYDFLKNLE VRHQWDVLCH GNPATEAARF VTGSDQNNTV TFLQPSIVGD  600
SNKLMILQDS FKDALGGMVV YAPMDLNTAY AAISGEVDPN TIPILPSGFI ISRDGRPSEG  660
EIEGGSSTLL TVAFQILVSG PSYSPDMNLE VSATTVNTLI SSTVQRIKAM LNCE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0783s0019.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052381e-135AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11.
GenBankCP0026881e-135CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876074.10.0homeobox-leucine zipper protein HDG9
SwissprotQ9FFI00.0HDG9_ARATH; Homeobox-leucine zipper protein HDG9
TrEMBLR0H7P30.0R0H7P3_9BRAS; Uncharacterized protein
STRINGAT5G17320.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84681531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17320.10.0homeodomain GLABROUS 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]