PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0746s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 122aa    MW: 13864.4 Da    PI: 5.9464
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0746s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.33.8e-083557124
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpse 24
                         + y+GVr +  +g+Wv+eIr+p++
  Araha.0746s0006.1.p 35 PVYRGVRKRN-WGKWVSEIREPRK 57
                         68*****887.**********844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-103660IPR001471AP2/ERF domain
PROSITE profilePS5103210.0333660IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-63660IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MIASESTSKS SETNSVSQES KEEKKKPVKD SGKHPVYRGV RKRNWGKWVS EIREPRKKSR  60
EIVELPSLGS SYDGLTQLGN EFIFSDSADL WAYPPQWSEG DYQMIPASLS QDWDLQGLYN  120
Y*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0746s0006.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054053e-81AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence.
GenBankAY5608553e-81AY560855.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g25810) mRNA, complete cds.
GenBankBT0249233e-81BT024923.1 Arabidopsis thaliana At5g25810 mRNA, complete cds.
GenBankCP0026883e-81CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankX946983e-81X94698.1 A.thaliana TINY mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197953.15e-37Integrase-type DNA-binding superfamily protein
SwissprotQ391274e-38TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A178URN21e-35A0A178URN2_ARATH; Tny
STRINGAT5G25810.12e-36(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.13e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]