PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0632s0023.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 295aa    MW: 32616.6 Da    PI: 10.1764
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0632s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573109.13.2e-3466165197
               DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdq 86 
                          k+fqrl+se Dei+lLqG+idf++++g +p++didaf+ +vkk i+f+++k+q+v+K++rLKkKf++ vkk     k+++e++f+k+ +q
  Araha.0632s0023.1.p  66 KMFQRLFSEADEIALLQGIIDFTSTKG-DPYEDIDAFCIYVKKLIDFNATKNQIVTKLQRLKKKFNNTVKKslkkGKTEDEIEFAKDIEQ 154
                          58*************************.9***************************************9998888899************ PP

               DUF573  87 kifelskkiWg 97 
                          k f+ls+kiWg
  Araha.0632s0023.1.p 155 KGFDLSRKIWG 165
                          **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-2768165IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MPLVTKPIPA KSGSAATVPE SSTAKRPLKE PASEAIKKLK TSETDHVKKP ITNDEVKKIS  60
GDDAKKMFQR LFSEADEIAL LQGIIDFTST KGDPYEDIDA FCIYVKKLID FNATKNQIVT  120
KLQRLKKKFN NTVKKSLKKG KTEDEIEFAK DIEQKGFDLS RKIWGNNGVL ASKSSRKKVG  180
GTPAPKEMKL VAHSSPKKQQ EEAKKPEKTE TKVVNTSLSI GREIASFFNA ENASSCGLDE  240
STITAVWAKV ADGAEKREVE GKWKKLKAKE FELCLQRSGL VNETAKMIFK AYES*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0632s0023.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936980.0AB493698.1 Arabidopsis thaliana At4g25210 mRNA for hypothetical protein, partial cds, clone: RAAt4g25210.
GenBankAF3250950.0AF325095.1 Arabidopsis thaliana putative protein (F24A6.50) mRNA, complete cds.
GenBankAL0353960.0AL035396.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F24A6 (ESSAII project).
GenBankAL1615620.0AL161562.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 62.
GenBankAL1615630.0AL161563.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 63.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869685.10.0GLABROUS1 enhancer-binding protein-like isoform X1
SwissprotQ9SB420.0STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLD7MG290.0D7MG29_ARALL; Uncharacterized protein
STRINGscaffold_701803.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-178DNA-binding storekeeper protein-related transcriptional regulator