PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0488s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 301aa    MW: 33665.5 Da    PI: 5.0235
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0488s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-1799149256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr+++ +g+++AeIrdps+   r+r +lg+f taeeAa  +++a+ +l+g+
  Araha.0488s0003.1.p  99 KYRGVRQRP-WGKFAAEIRDPSS---RTRLWLGTFATAEEAAIGYDRAAIRLKGH 149
                          8********.**********965...4*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-1199149IPR001471AP2/ERF domain
CDDcd000182.16E-3199155No hitNo description
Gene3DG3DSA:3.30.730.102.6E-2999155IPR001471AP2/ERF domain
PROSITE profilePS5103221.73399156IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2099156IPR016177DNA-binding domain
SMARTSM003801.3E-3499162IPR001471AP2/ERF domain
PRINTSPR003676.7E-10100111IPR001471AP2/ERF domain
PRINTSPR003676.7E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MKSRVRKTKY TVHRKTTSVP FDGFPKVVKI IVTDPCATDS SSDEENDSKS VAPRVKRYVE  60
EIRFGEYDDE PKPARKARNK TAAAAAVVNG GDLVKPVVKY RGVRQRPWGK FAAEIRDPSS  120
RTRLWLGTFA TAEEAAIGYD RAAIRLKGHN AQTNFLTPPP SPTTEVLLPE TPVIDLETVS  180
GCDSARDSQI SLCSPTSVLR FNHNDEAEYR TEPKEEKTPV SDPFFLPDLF RAGDYFWDSE  240
ITPDPLFLDE IHQSLLPNNN NNNTVSDKDP NLSESFPLGV IGDFSSWDVD EFFQDHLLDK  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21100155359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-21100155662ATERF1
3gcc_A5e-21100155662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0488s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053970.0AC005397.3 Arabidopsis thaliana chromosome 2 clone T3F17 map CIC02E07, complete sequence.
GenBankAK2276610.0AK227661.1 Arabidopsis thaliana mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL14-24-M06.
GenBankAY0746380.0AY074638.1 Arabidopsis thaliana At2g46310/T3F17.4 mRNA, complete cds.
GenBankBT0031210.0BT003121.1 Arabidopsis thaliana At2g46310 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885626.10.0ethylene-responsive transcription factor CRF5
SwissprotO823390.0CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLD7LDY70.0D7LDY7_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.4__2841__AT2G46310.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.11e-169cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]