PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0473s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 285aa    MW: 31535.4 Da    PI: 9.0946
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0473s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017162184123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k+F ++  L  H  +H
  Araha.0473s0002.1.p 162 FECGGCKKVFGSHQALGGHRASH 184
                          89************999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.41177104IPR007087Zinc finger, C2H2
SMARTSM003550.0377799IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-777101IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-77899No hitNo description
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-7157184No hitNo description
PfamPF139121.1E-7161185IPR007087Zinc finger, C2H2
SMARTSM003553162184IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66162189IPR007087Zinc finger, C2H2
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
PfamPF139127.3E-12221246IPR007087Zinc finger, C2H2
SuperFamilySSF576675.11E-5221248No hitNo description
PROSITE profilePS501579.078222249IPR007087Zinc finger, C2H2
SMARTSM003550.067222244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MNNNHSFYDR NFHIPLHPSN ASNPNPNLQF ALSSTYDHSP KKKRTKTVAS SSSSSPKSAS  60
KPKYTKKPDP NAPKITRPCT ECGRQFWSWK ALFGHMRCHP ERQWRGINPP PNYRGPTTAS  120
SRQLNQRSPN WVSFMTEEDH EVASCLLMLS NGTPSSSSSE RFECGGCKKV FGSHQALGGH  180
RASHKNVKGC FAITNVTDDL MTVTTSSDQD HKAKILTFSG HHKCNICFRV FPSGQALGGH  240
MRCHWEREEE TMISGALDLN VPATIQDLST SDTSGCCLDL RLGL*
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0473s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937190.0AB493719.1 Arabidopsis thaliana At4g35280 mRNA for hypothetical protein, partial cds, clone: RAAt4g35280.
GenBankAL0226040.0AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project).
GenBankAL1615870.0AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankDQ4468960.0DQ446896.1 Arabidopsis thaliana clone pENTR221-At4g35280 zinc finger family protein (At4g35280) mRNA, complete cds.
GenBankDQ6532460.0DQ653246.1 Arabidopsis thaliana clone 0000012370_0000008938 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867079.10.0zinc finger protein ZAT3
SwissprotO654990.0ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLD7MD220.0D7MD22_ARALL; Zinc finger family protein
STRINGscaffold_700593.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-175C2H2-like zinc finger protein