PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0439s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 706aa    MW: 80451.8 Da    PI: 5.5779
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0439s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.71e-1033267022373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPi 90 
                          ++lL+ cA+ vs+gd+  a+ lL ++++++sp gd+ qRla++f++AL+arl +s+ ++ ++   + ++++++ ++ l+++++f  +sP+
  Araha.0439s0002.1.p 326 RTLLTLCAQSVSAGDKITADDLLRQIRKQCSPVGDASQRLAHFFANALEARLEGSTGTTIQSYyDSISSKKRTAAQILKSYSVFLSASPF 415
                          6799**************************************************66555555527777777789**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +++ ++  N++I +a+eg++ +HiiDf+i +G+QWp ++q L++ ++g  +lRiTg++ p++g   +e+++ tg+rL+++++++g+pfe+
  Araha.0439s0002.1.p 416 MTLIYFFSNKMIFDAAEGASVLHIIDFGILYGFQWPMFIQHLSKTKAGLRKLRITGIEIPQHGlrPTERIQDTGRRLTEYCKRFGIPFEY 505
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          n++++k++e++++ee++++p+E+laVn +l+ ++l d     e+ +rd++Lkl+++++P+v+  +  + + n++ F +rf eal +ysal
  Araha.0439s0002.1.p 506 NAIASKNWETIRMEEFKIRPNEVLAVNAALRFKNLRDVIPGEEDcPRDAFLKLIRDMNPNVFLSSTINGSFNAPFFTTRFKEALFHYSAL 595
                          ***99******************************98877777789******************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                          fd + a+l++e+ eri  E e+ gre++nv+aceg +r+er et+++W+ r+ +aGFk+ p++ + ++  +  ++k +  + + ++e+s+
  Araha.0439s0002.1.p 596 FDLFGATLSKENPERIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMIRAGFKQKPVEAELVQLFREKMKKWGyHKDFVLDEDSN 685
                          ***********************************************************************99999999999******** PP

                 GRAS 357 slvlgWkdrpLvsvSaW 373
                          ++++gWk+r L+s S+W
  Araha.0439s0002.1.p 686 WFLQGWKGRILFSSSCW 702
                          ***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.229299682IPR005202Transcription factor GRAS
PfamPF035143.6E-101326702IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MMESNYSGVV NGLEYYDVSF LPNSIPDLGF GVPSSSDFDL RMDHQYHHQP SIWVPDQDHH  60
FSPPADEIDS ENTLLKYVNL LLMEESLAEK QSMFYDSLAL RQTEEMLQQV ISDSQTHSFI  120
PNSISTTCTS SNSGDYSNSS NSSVRVETAA NSAENEVLLY DNHLGDSGVV SFPGSYMLRG  180
GGQFRQPANE ILVRSMFSDA ESVMQFKRGL EEASKFLPNT DQWIFNLEPE MERVVPVKQE  240
KGWSGISRTR KNHHEREEED DLEEARSSKQ FAVNEEDGKL TEMFDKVLLL DGEYDPLIIE  300
DGENGSSKAQ VKKGRGKKKS RAVDFRTLLT LCAQSVSAGD KITADDLLRQ IRKQCSPVGD  360
ASQRLAHFFA NALEARLEGS TGTTIQSYYD SISSKKRTAA QILKSYSVFL SASPFMTLIY  420
FFSNKMIFDA AEGASVLHII DFGILYGFQW PMFIQHLSKT KAGLRKLRIT GIEIPQHGLR  480
PTERIQDTGR RLTEYCKRFG IPFEYNAIAS KNWETIRMEE FKIRPNEVLA VNAALRFKNL  540
RDVIPGEEDC PRDAFLKLIR DMNPNVFLSS TINGSFNAPF FTTRFKEALF HYSALFDLFG  600
ATLSKENPER IHFEGEFYGR EVMNVIACEG VDRVERPETY KQWQVRMIRA GFKQKPVEAE  660
LVQLFREKMK KWGYHKDFVL DEDSNWFLQG WKGRILFSSS CWVPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-413257025374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0439s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0224640.0AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870888.10.0scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLD7KH330.0D7KH33_ARALL; Predicted protein
STRINGAl_scaffold_0001_6970.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein