PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0297s0011.5.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 397aa    MW: 44415.3 Da    PI: 6.4377
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0297s0011.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.8e-093656526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                         +C +++r G+C+yG+rC++ H+
  Araha.0297s0011.5.p 36 ICTYYQR-GICSYGSRCRYEHV 56
                         7**9999.***********997 PP
2zf-CCCH19.61.6e-06134156326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +++C+ fa+ G C++Gd C+ +Hg
  Araha.0297s0011.5.p 134 QPICS-FAAAGDCPRGDECPHIHG 156
                          68999.*************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0015429IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-7728IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.084830IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6053158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-53355IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-43357IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-63656IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-43655IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.652131158IPR000571Zinc finger, CCCH-type
SMARTSM003560.013132157IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.41E-13189264No hitNo description
Gene3DG3DSA:3.30.40.107.9E-10193259IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001623.89E-4199259No hitNo description
SMARTSM001844.0E-7200257IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.342200258IPR001841Zinc finger, RING-type
PfamPF000973.3E-7200257IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180224233IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.15287316IPR000571Zinc finger, CCCH-type
SMARTSM003560.14287315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MKIISGILCK FFAHGACLKG EHCEFSHDWK DPTNNICTYY QRGICSYGSR CRYEHVKASR  60
PHPSASSSSP VPRSSPASAS NPLACAFIPG VSERDLSPVP SSCLKPTWNL DSFHQDSLDE  120
VNTFNPGTVK PEEQPICSFA AAGDCPRGDE CPHIHGNICP TCGKCCLHPF RPEEREEHKK  180
VCEKKQKQLE ALKLSQEIEC CVCLERVLSK ATPAERKFGL LTECDHAFCI ACIRNWRSSS  240
PSTGMDVNST LRACPICRKL SYFVVPSVIW FSAPEEKKEI MDNYREKLRS IDCKHFSFGD  300
GNCPFGTSCF YKHTVKPGSY AWKYHRPPPR RPRPSGTNFS DVDTLVNMIG NIISEGEYGP  360
IGFEDTDDDE LTTTDMMMLL MHMDIESEDS SNEDSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0297s0011.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9035760.0GQ903576.1 Arabidopsis thaliana ecotype Wassilewskija chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881767.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
RefseqXP_020881768.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
SwissprotE0X9N40.0C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLE0X9N60.0E0X9N6_ARATH; CCCH-type zinc finger protein C3H69
STRINGBostr.3595s0001.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-130C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]