PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0297s0011.3.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 395aa    MW: 44288.1 Da    PI: 6.5411
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0297s0011.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.8e-093454526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                         +C +++r G+C+yG+rC++ H+
  Araha.0297s0011.3.p 34 ICTYYQR-GICSYGSRCRYEHV 54
                         7**9999.***********997 PP
2zf-CCCH19.71.6e-06132154326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +++C+ fa+ G C++Gd C+ +Hg
  Araha.0297s0011.3.p 132 QPICS-FAAAGDCPRGDECPHIHG 154
                          68999.*************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.54128IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6052956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-43155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-43453IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-63454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.652129156IPR000571Zinc finger, CCCH-type
SMARTSM003560.013130155IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.39E-13187262No hitNo description
Gene3DG3DSA:3.30.40.107.8E-10191257IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.33E-4197257No hitNo description
PROSITE profilePS5008912.342198256IPR001841Zinc finger, RING-type
SMARTSM001844.0E-7198255IPR001841Zinc finger, RING-type
PfamPF000973.3E-7198255IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180222231IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.14285313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.15285314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSKRILCKFF AHGACLKGEH CEFSHDWKDP TNNICTYYQR GICSYGSRCR YEHVKASRPH  60
PSASSSSPVP RSSPASASNP LACAFIPGVS ERDLSPVPSS CLKPTWNLDS FHQDSLDEVN  120
TFNPGTVKPE EQPICSFAAA GDCPRGDECP HIHGNICPTC GKCCLHPFRP EEREEHKKVC  180
EKKQKQLEAL KLSQEIECCV CLERVLSKAT PAERKFGLLT ECDHAFCIAC IRNWRSSSPS  240
TGMDVNSTLR ACPICRKLSY FVVPSVIWFS APEEKKEIMD NYREKLRSID CKHFSFGDGN  300
CPFGTSCFYK HTVKPGSYAW KYHRPPPRRP RPSGTNFSDV DTLVNMIGNI ISEGEYGPIG  360
FEDTDDDELT TTDMMMLLMH MDIESEDSSN EDSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0297s0011.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9035760.0GQ903576.1 Arabidopsis thaliana ecotype Wassilewskija chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881767.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
RefseqXP_020881768.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
SwissprotE0X9N40.0C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLE0X9N60.0E0X9N6_ARATH; CCCH-type zinc finger protein C3H69
STRINGBostr.3595s0001.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-132C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]