PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.0100s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 39098.6 Da PI: 6.9053 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.2 | 4.5e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl Araha.0100s0001.1.p 15 KGPWTPEEDQKLIDYINKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.7e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ +G++ W++Ia++++ gRt++++k++w+++ Araha.0100s0001.1.p 68 RGRFSFEEEETIIQLHSIMGNK-WSAIAARLP-GRTDNEIKNYWNTH 112 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.462 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.23E-32 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.46E-12 | 17 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.228 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.4E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.17E-12 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MGRSPCCEKK NGLKKGPWTP EEDQKLIDYI NKHGYGNWRT LPKNAGLQRC GKSCRLRWTN 60 YLRPDIKRGR FSFEEEETII QLHSIMGNKW SAIAARLPGR TDNEIKNYWN THIRKRLLKM 120 GIDPVTHTPR LDLLDISSIL SSSIYNSTYH HHHHHQHMNM SRLMMGDGHH QPLVNPEILK 180 LATSLFSNQT HPNNTHENHT VNQTEVKQYQ TGYNMTGNQE LQSWFPIMDQ FAEFQDLMPM 240 KTTVQDSLPS FPSNHEDEYS KSNSVLEPYY SDFASVLTTP SSSPTPLNSS STTSTEDEKE 300 SYYSNNVMST YEIADYSFDV DGFLQFQETK NHWDRVM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-29 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in salt stress response. {ECO:0000305|PubMed:26139822}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00429 | DAP | Transfer from AT4G05100 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.0100s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:26139822}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF386932 | 0.0 | AF386932.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. | |||
GenBank | BT001182 | 0.0 | BT001182.1 Arabidopsis thaliana Unknown protein (At4g05100) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002872736.1 | 0.0 | transcription factor MYB74 | ||||
Swissprot | Q9M0Y5 | 0.0 | MYB74_ARATH; Transcription factor MYB74 | ||||
TrEMBL | D7M1Y3 | 0.0 | D7M1Y3_ARALL; Predicted protein | ||||
STRING | Bostr.2983s0050.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 1e-170 | myb domain protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Araha.0100s0001.1.p |
Publications ? help Back to Top | |||
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