PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YNN2E
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 352aa    MW: 38038.7 Da    PI: 6.3928
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YNN2EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17257290134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Aradu.YNN2E 257 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 290
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.7E-763346IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.583251287IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-16251301IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-14255314No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14255288IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.69E-13256303No hitNo description
PfamPF003202.4E-15257290IPR000679Zinc finger, GATA-type
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MVGPNFMDEL DCGNFFDHID DLLDFPVEDV DGAGAATFPA AAAAGNCNSL ASIWPPETDS  60
FPGSDSVFSR NSASDLSAEL SVPYEDIVQL EWLSNFVEDS FSGGSLTMKK VEQPSCTTKD  120
DSAHNQFQTS SPVSVLESSS SCSGSKVPPR SPEVYIPVPC GRARSKRPRP ATFNPRPAMQ  180
LISPASSFVG ENMQPNVISA TKAYSDSENV AESQPVMKMP KQVSGEPKKK KKIKVTPPSL  240
GQADDSNQNA SQPVRKCMHC EITKTPQWRA GPMGPKTLCN ACGVRYKSGR LFPEYRPAAS  300
PTFCPSLHSN SHKKVLEMRC KGIEKSGFAN HHADASPELI PNTNSSLTLE YI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165169KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.YNN2E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942642.10.0GATA transcription factor 8
TrEMBLA0A445BCV40.0A0A445BCV4_ARAHY; GATA transcription factor
STRINGXP_007143712.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.29e-43GATA family protein