PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.YJC68 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 147aa MW: 16691.9 Da PI: 7.1113 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.2 | 4.5e-07 | 68 | 104 | 1 | 37 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCsk 37 +fY +YAk+vGF ++++++ ++++e++++ C+ Aradu.YJC68 68 DFYASYAKKVGFISKIQNTNFDRMTKEMINQSIHCNW 104 6**********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-4 | 68 | 104 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MEFNLLETGC HAPASFTDDN TTHSSDNLLN SCDVEGEKSN KLPDHSCLVE DEIPRVGMQF 60 EKLKLAQDFY ASYAKKVGFI SKIQNTNFDR MTKEMINQSI HCNWRVSVGL VSKHPHERIR 120 LLPWGAEQGY IQSLTGRSKI GSYSRLI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.YJC68 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016177944.1 | 3e-49 | protein FAR1-RELATED SEQUENCE 6-like | ||||
Refseq | XP_025684794.1 | 3e-49 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A445DFK4 | 1e-90 | A0A445DFK4_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14126 | 2 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-06 | FAR1-related sequence 6 |