PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.XC2X4

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 556aa MW: 63260.7 Da PI: 7.5125

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.XC2X4	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.6	5.8e-25	85	176	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fY++Y++ GF +r+ k+ k+ r+gei+++t+ C++eg+r+++ + ++++r+++++tr+gC+a++++k++ +++w+v++++ eHnH+l p Aradu.XC2X4 85 RFYEQYSRAKGFAMRQGKKLKN-RKGEIVRYTYLCNREGFRDRKWLEmQDRKREHKVVTRCGCQAEMRIKQKAeSNNWYVSRFVDEHNHDLLP 176 5***************9998.7788***********998775778888999**********999**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-23	85	176	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50158	8.68	503	520	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MSSCSRTIPG LDASREENFD GFGDTGDIDA TESLLDIGME TEEEELGEES PNEEDGEQNG 60 SAEHVVFGRA QILEMEFANP DEACRFYEQY SRAKGFAMRQ GKKLKNRKGE IVRYTYLCNR 120 EGFRDRKWLE MQDRKREHKV VTRCGCQAEM RIKQKAESNN WYVSRFVDEH NHDLLPAKFV 180 SYLPAYRKLS DVDRAHMESL RQVGISIPKI YESIAAQAGG FNLVPFTKRD MTTSRCESLH 240 AKMGRFVERR YGILDFVTNF QRCVEFLRDN EEELDFRSLY GSPVLQTQFP ELEKSGAVNY 300 TREIFLRFRE ALKSSVRVTI VECKKLEDRT VYVTQKYRRP QSRWTVAHHF GTDSFFCSCM 360 RMESFELPCV NILAVLVQLD IGYLPKSLVL QRWSKTAKVE IEGPSIMNEP GEANEVYRSR 420 MGAFLQHCKR LARVACMRES DFKSCLDRIV EETYVLEMKN GVGTAAQGTA AGGQDGVRDP 480 VAVRTKGTGR AQEPFGCRGI KRRKCSNCGV VGHRRTRCPS GPCSQPVCTQ DLAEGALGRD 540 DSQSHGTEIY MGAIVV

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MSSCSRTIPG LDASREENFD GFGDTGDIDA TESLLDIGME TEEEELGEES PNEEDGEQNG  60
SAEHVVFGRA QILEMEFANP DEACRFYEQY SRAKGFAMRQ GKKLKNRKGE IVRYTYLCNR  120
EGFRDRKWLE MQDRKREHKV VTRCGCQAEM RIKQKAESNN WYVSRFVDEH NHDLLPAKFV  180
SYLPAYRKLS DVDRAHMESL RQVGISIPKI YESIAAQAGG FNLVPFTKRD MTTSRCESLH  240
AKMGRFVERR YGILDFVTNF QRCVEFLRDN EEELDFRSLY GSPVLQTQFP ELEKSGAVNY  300
TREIFLRFRE ALKSSVRVTI VECKKLEDRT VYVTQKYRRP QSRWTVAHHF GTDSFFCSCM  360
RMESFELPCV NILAVLVQLD IGYLPKSLVL QRWSKTAKVE IEGPSIMNEP GEANEVYRSR  420
MGAFLQHCKR LARVACMRES DFKSCLDRIV EETYVLEMKN GVGTAAQGTA AGGQDGVRDP  480
VAVRTKGTGR AQEPFGCRGI KRRKCSNCGV VGHRRTRCPS GPCSQPVCTQ DLAEGALGRD  540
DSQSHGTEIY MGAIVV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	497	502	RGIKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.XC2X4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015957369.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445ADU5	0.0	A0A445ADU5_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11042	2	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	4e-19	FAR1-related sequence 10