PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.X7LBF | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 253aa MW: 28504.8 Da PI: 6.7495 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.2e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l++d++ ++G++ W++Ia+ ++ gRt++++k++w++ Aradu.X7LBF 66 RGNITLEEQLLILDLHSRWGNR-WSKIAEQLP-GRTDNEIKNYWRT 109 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.44E-24 | 22 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-5 | 24 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-5 | 25 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-12 | 26 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.209 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 66 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 68 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.60E-10 | 70 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MIMRSLSDCG SSVANGSEED MEIRKGPWTE EEDSALLNHI TTYGLKRSGK SCRLRWLNYL 60 RPNVRRGNIT LEEQLLILDL HSRWGNRWSK IAEQLPGRTD NEIKNYWRTR VVKQAKQLKC 120 DVNSKQFRDA LRYVWMPRLM EQIQAQGRST MCVSQAREIV NPVTSVSTAS SKSCSSFSGC 180 EQFQASSSVS DSCVSYYSLM GSGSGAGSSE RVEKGATSSS TPFEPENGFG GADFWTDENI 240 WFLQQQLADD DHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 22 | 107 | 24 | 120 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.X7LBF |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015939423.1 | 1e-161 | transcription factor MYB108-like | ||||
Swissprot | Q2QZJ8 | 9e-66 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A445BLU7 | 0.0 | A0A445BLU7_ARAHY; Uncharacterized protein | ||||
STRING | XP_007163206.1 | 1e-97 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF875 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47190.1 | 2e-72 | myb domain protein 2 |
Publications ? help Back to Top | |||
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