PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.X5630
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 763aa    MW: 84670.2 Da    PI: 6.8335
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.X5630genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06156177426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   lC+ffa  G C+ G  C+F+H+
  Aradu.X5630 156 TLCKFFAN-GNCRNGKHCRFSHD 177
                  59**8888.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0142956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00713055IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-43356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.25888115IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-488114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-589113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-491113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.164152179IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5152178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-7155177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5157180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MPRSSRSRSP PHGFKWDSGA NDRNRTRAAE SKQICRDFAV GKCRRGSHCY FLHHDDQNYE  60
DIRESKNRED GAPRYSASHE SREHTLRSRS TEACVHFAKG RCRMGASCKY VHHNNSDEYG  120
KGTLDELTRE RENDGRRRDN SFEQGGGHIP SRSGDTLCKF FANGNCRNGK HCRFSHDRQD  180
RSLRDDRWGS NLAGDHQTLD RPKLSDSASP TRRLRSDRWG TDGIMADKDK VWDSPNRNDI  240
ATYDSAKLVE EKPGNIGATE HEQTVWPVKE GWGHSLDQSS VQGEPPFLSD KKEADHWIAD  300
NAGASIPVSQ SVAADIWPGD AKMSPDWNYR AGSSTRTEIE HGQNDRGLTQ GSTYPATTEH  360
DRIQVPGQGF NQNVQNVNLL HLPSCHAVGQ NKVTVPILPS RAGIPEGMQK QEVSVEKKYS  420
AEPNITGEGS SQISSSNPST QDTVSKEQLA QLSNLSASLA HILGSGQQLP QLYAALNSHN  480
TNDTPSLANT EVPAMPVSNT YVKPDPAVGF VKQYDPMSDS VDLNDAEASG ICPVISPSKK  540
SANIEISSLL SNTGKQNCGD TSKAPSSEEQ PAKNEHLTQL QPGQNIEIQK ETNEAVADDK  600
PNPQDDHKIT KENGPSENID HNGVEANKSK DVKGIRAFKF SLVEFVKELL KPTWKEGKIT  660
KDDYKTIVKK VVDKVTGTMQ GAHIPQTQEK IDHYLSFSKP KLNKLVQMNV YSDETLETST  720
GRLNFAYVEK LHHYFCSQEK APCNVVQLAE KCDSYTRGEQ DLA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.X5630
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020989092.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_025623500.10.0zinc finger CCCH domain-containing protein 38 isoform X1
TrEMBLA0A445B5830.0A0A445B583_ARAHY; Uncharacterized protein
STRINGGLYMA04G39221.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.17e-07C3H family protein