PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.X3GS1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ERF | ||||||||
Protein Properties | Length: 195aa MW: 20769.4 Da PI: 10.3084 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.7e-20 | 13 | 63 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++ a+++l+g+ Aradu.X3GS1 13 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 63 69*******.**********883....5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.38E-22 | 13 | 70 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.45E-28 | 13 | 72 | No hit | No description |
PROSITE profile | PS51032 | 22.721 | 13 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-13 | 13 | 62 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 13 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-35 | 13 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-11 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MASSSSSASR EGHYRGVRKR PWGRYAAEIR DPWKKTRVWL GTFDTPEEAA LAYDGAARSL 60 RGAKAKTNFP PAPVAAAGGI CLDLNVNAPN SDHHRWPSVP VRAGVGGGGI FGEFLHTRVL 120 KDVDLAHQPH QPPPPHPIHH AAALAAHHHR RGEVTVAVAG GGVEQVAGSG STASYLGLVR 180 RGIPIDLNEP PPLWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 13 | 70 | 5 | 63 | ATERF1 |
3gcc_A | 3e-21 | 13 | 70 | 5 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.X3GS1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015943144.1 | 1e-139 | ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A444WYQ5 | 1e-135 | A0A444WYQ5_ARAHY; Uncharacterized protein | ||||
STRING | AES63877 | 8e-75 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 9e-37 | ERF domain protein 12 |