PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.WJ22Z
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 152aa    MW: 17504 Da    PI: 8.3176
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.WJ22ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-10107133127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C +++r  +C yG+rC+F+H++
  Aradu.WJ22Z 107 PGEADCIYYLRIEFCVYGSRCRFNHPR 133
                  57899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.906106134IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-7108133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6109135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5112134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
GWKYVELQRG AKEERSIIVM RSSNRSHRKN LFIFYSISSC FLVSAQWRCT GDPARVPDLI  60
NHWSRSEFDS KENVGCCEMC LILILNNTKP TWQMGLCATE KSYPQRPGEA DCIYYLRIEF  120
CVYGSRCRFN HPRDQAMVVG AIARTGGGEY TE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.WJ22Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020998009.11e-97zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A445CQU14e-37A0A445CQU1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1922834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.13e-17C3H family protein