PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.WCX40

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

SRS

Protein Properties

Length: 313aa MW: 36471.7 Da PI: 8.9531

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.WCX40	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	67.5	4.4e-21	162	212	24	77
DUF702 24 CRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkre 77 RtCCksrgfdC+thvkstWvpa+krrerqqql++ +++ a++ +kr+r+ Aradu.WCX40 162 SRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLTSIQQQL---LAADVPKRQRD 212 6********************************9986655...34556666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03134	5.4E-10	29	73	IPR004345	TB2/DP1/HVA22-related protein
Pfam	PF05142	8.1E-19	162	206	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.0E-14	162	187	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF03134	2.8E-8	214	249	IPR004345	TB2/DP1/HVA22-related protein

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MGASENNFLH VIAKNFDVLA LPLVTLVYPL YASIQAIETR SIADDQQWLT YWVLYSLITL 60 FELTFAKVLE VYPPGMKTFP PSDTFYWYKN EDFSSYRSGL ELWNHHHHHH QPEHDLIPQA 120 RSLQLRGCSR SGSNHRVQRS VTLEIGLPGD GVGCGERSSK WSRTCCKSRG FDCQTHVKST 180 WVPASKRRER QQQLTSIQQQ LLAADVPKRQ RDHAWLAIWP YAKLILSCWL VLPHFNGAAH 240 VYKQYIRPFY MNPQLPHLPQ MPRTSHMWYV PRKNIFSKQD DVLTAAERYM EEHGTEAFER 300 LISRVTNICY VIT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.WCX40

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9S784	3e-29	HA22C_ARATH; HVA22-like protein c
TrEMBL	A0A445D609	3e-58	A0A445D609_ARAHY; HVA22-like protein
STRING	GLYMA02G11770.1	1e-51	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	8e-14	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Chen CN,Chu CC,Zentella R,Pan SM,Ho TH AtHVA22 gene family in Arabidopsis: phylogenetic relationship, ABA and stress regulation, and tissue-specific expression. Plant Mol. Biol., 2002. 49(6): p. 633-44 [PMID:12081371] Guo WJ,Ho TH,David Ho TH An abscisic acid-induced protein, HVA22, inhibits gibberellin-mediated programmed cell death in cereal aleurone cells. Plant Physiol., 2008. 147(4): p. 1710-22 [PMID:18583533]