PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.W74FU | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 234aa MW: 26236.1 Da PI: 6.1601 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9.4e-06 | 190 | 212 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H ++H Aradu.W74FU 190 FVCEICKKGFQRDQNLQLHWQRH 212 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81660 | 1.24E-15 | 22 | 148 | IPR023299 | P-type ATPase, cytoplasmic domain N |
Pfam | PF13246 | 1.1E-6 | 33 | 106 | No hit | No description |
Gene3D | G3DSA:3.40.1110.10 | 1.2E-8 | 69 | 141 | IPR023299 | P-type ATPase, cytoplasmic domain N |
Gene3D | G3DSA:3.30.160.60 | 3.8E-4 | 189 | 212 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.71E-5 | 189 | 213 | No hit | No description |
PROSITE profile | PS50157 | 9.806 | 190 | 212 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 192 | 212 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
RKKEAEIKGT ESAEKLKTEI PEEAIFQNTS SEVVKDKTDN NTILGTATES ILLEFGLLED 60 GDLMHIVEPS NSVRNKMSVL VSLPNRGVRA FCKGASEIIL RICDKIIDSN GNDVDLPEEQ 120 ANKVNALRTL SVVVKDIDAT EGENSILDNG YTLIIVGLKR EFVLTSVIHA DSKAEVIAPS 180 PKSLMAMNRF VCEICKKGFQ RDQNLQLHWQ RHNLPWKLRQ REKEVVVRKK VDEG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 218 | 229 | RQREKEVVVRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol into small vacuoles. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.W74FU |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020971580.1 | 5e-69 | calcium-transporting ATPase 4, plasma membrane-type isoform X2 | ||||
Refseq | XP_025633125.1 | 6e-69 | calcium-transporting ATPase 4, plasma membrane-type | ||||
Swissprot | O22218 | 2e-35 | ACA4_ARATH; Calcium-transporting ATPase 4, plasma membrane-type | ||||
TrEMBL | A0A445AHT7 | 4e-68 | A0A445AHT7_ARAHY; Calcium-transporting ATPase | ||||
STRING | XP_004498043.1 | 4e-52 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-21 | C2H2-like zinc finger protein |