PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.W4C7I
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 1025aa    MW: 113148 Da    PI: 6.3453
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.W4C7IgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.1e-22129230199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l
  Aradu.W4C7I 129 FCKQLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQL 223
                  99*****************************9545444.38************************************************..5688889 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Aradu.W4C7I 224 LLGIRRA 230
                  ****997 PP
2Auxin_resp122.82.5e-40255338183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Aradu.W4C7I 255 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYsHQISPGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 338
                  79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-42119258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-41121244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-18128220No hitNo description
PfamPF023622.0E-20129230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843129231IPR003340B3 DNA binding domain
SMARTSM010191.9E-22129231IPR003340B3 DNA binding domain
PfamPF065073.1E-35255338IPR010525Auxin response factor
PROSITE profilePS5174523.628913997IPR000270PB1 domain
SuperFamilySSF542773.92E-6932991No hitNo description
PfamPF023094.2E-6960998IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1025 aa     Download sequence    Send to blast
MKTQPEPAAV VAVPNPEEKK SINPELWQAC AGPLVNLPPA GTHVFYFPQG HSEQVAASLK  60
KDVDGQIPNY PNLPSKLLCL LHSVTLHADP ETDEVYAQMT LQPVPSYDKE ALLRSDLALK  120
SNKAQPEFFC KQLTASDTST HGGFSVPRRA AEKIFPPLDY SMQPPAQELV ARDLHDNVWT  180
FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVLFIRDEK QQLLLGIRRA NRQPANISSS  240
VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRASPSEFVI PLAKYYKAVY SHQISPGMRF  300
RMMFETEDSG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGEKR SRVSLWEIEP  360
VTAPFFICPP VNNSTIYYLH SNDDPSDFDN LFKRTMPWLG DDMCMKDPQG LPGMSLVQWM  420
NMQQNPSLAN SMQPNYVPSL PGSVLQNLPG ADISRQLGFS SSQIPQPNNV AFNTQRLLQT  480
AQQLDHLQKL PSASVNLGTV MQPQQQLGDI SQQSKQNLGS QTLPQSQVQA QILHPQNLVQ  540
TNNILQQQQS SIQNHQFNRC VPQNPPQQQQ QQQTIMGQNQ QQTMVPSTIP DHVQQLQMSD  600
NQIQLQLLQK LQQQQQTLLA QQSALQQPSQ LAQIQDQQRQ LLDAAQSFSR LVPPGQVLEI  660
PPVLQNSLPE SNAITNQMTK AGRSNIHISH LPQQPKPQQQ SGLLPEMSGQ MALPPTPSPN  720
QLSAAGSGIL NGAAVAGQSV ITDDVPSCST SPSTNNSASA VPLLINSQLH RSSITADDMA  780
QSTATLLSSG ALETMSSGAN MVKDLQPKSE VKPSLNISKN QNQGSLVHQT YLNGAAAQTD  840
YLDTSSSTTS VCLSQSDAHM HQNNNPMSYN PQSMLFRDNS QDGEVQADTR SNVPYGNNVD  900
SQMGMPLNPD SLLPKGTVYK RGAVGRSIDI TRYSDYEELK HDLARRFGIE GQLEDRHRIG  960
WKLVYVDHEN DVLLVGDDPW EEFVNCVRCI KILSPQEVQQ MSLDGDFGNA SLPNQACSSS  1020
DGGNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1681835947388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.W4C7I
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020998639.10.0LOW QUALITY PROTEIN: auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A445D3920.0A0A445D392_ARAHY; Auxin response factor
STRINGXP_007152995.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19