PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.W2W6E

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 268aa MW: 30142.1 Da PI: 7.7229

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.W2W6E	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.8	1.5e-17	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + ++t+ + +C a++ ++ k g w ++k++l+H+H+++p Aradu.W2W6E 51 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---IEKTNLTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137 6*************998776..8889*********998877...999***********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-15	51	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDHSTSDCQL NSGEVDYEFE SNEVPDPLSV VDDELVPKVG MTFTTLEDAE KFYRNYAKAA 60 GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPIEKTN LTAGLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSHPCCPSKA EMPKQHRELS MSIRQRESDA ADFHTVIPCA TKSSIEAQFQ 180 DAYTHAKSRE VQAQFRGKAN CITRLKNSAL GYSIYEIGEQ VSSSIFNKFV VTYDSVAAES 240 RGILCRHALS MLSFEQVSQV SPRYILER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.W2W6E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-160	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997266.1	1e-103	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445CV52	1e-176	A0A445CV52_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-12	FAR1 family protein