PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.VDW04 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WOX | ||||||||
Protein Properties | Length: 200aa MW: 23159.7 Da PI: 7.1968 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.6 | 1.6e-21 | 7 | 66 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ Le+l+++ r+psaee+++++++l +++ ++V++WFqN++a++++ Aradu.VDW04 7 SRWNPTKEQISMLENLYKQgIRTPSAEEIQQITARLraygHIEGKNVFYWFQNHKARQRQ 66 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 117.4 | 6.4e-38 | 6 | 68 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+Pt+eQi +Le+lyk+G+rtP++eeiq+ita+L++yG+ie+kNVfyWFQN+kaR+rqkq Aradu.VDW04 6 SSRWNPTKEQISMLENLYKQGIRTPSAEEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQ 68 68***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.37 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-7 | 4 | 71 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.35E-13 | 4 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.8E-19 | 7 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-9 | 7 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.05E-7 | 8 | 68 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MEDGGSSRWN PTKEQISMLE NLYKQGIRTP SAEEIQQITA RLRAYGHIEG KNVFYWFQNH 60 KARQRQKQKQ HTLAYFNRSF LHHHHQPAVM CGPYCMVGTM RRIPDNNHSE DETMFDKQQD 120 RTLDLFPLHP TGILEGKKET QDNNNNNMMT MMCSFMAPSS SSSSDTTHDD GHGYRHQQQQ 180 LPFFDFFVTS GHGQGSFESG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.VDW04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015952266.1 | 1e-152 | WUSCHEL-related homeobox 5-like isoform X1 | ||||
Refseq | XP_025686163.1 | 1e-152 | WUSCHEL-related homeobox 5-like | ||||
TrEMBL | A0A445E493 | 1e-151 | A0A445E493_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA12G06895.1 | 3e-61 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 3e-36 | WUSCHEL related homeobox 2 |