PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.V9RYQ

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WOX

Protein Properties

Length: 340aa MW: 38575.7 Da PI: 8.5122

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.V9RYQ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.1	2.3e-21	83	142	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+ ql +Leel+++ +++psae+++++A++l +++ ++V++WFqN++a+e++ Aradu.V9RYQ 83 TRWSPTPIQLLVLEELYRQgTKTPSAEQIQQIASQLrrfgKIEGKNVFYWFQNHKARERQ 142 7***************99************************************97 PP
2	Wus_type_Homeobox	109.9	1.5e-35	81	144	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 + tRW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ Aradu.V9RYQ 81 QGTRWSPTPIQLLVLEELYRQGTKTPSAEQIQQIASQLRRFGKIEGKNVFYWFQNHKARERQKR 144 579***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.03E-12	78	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.872	78	143	IPR001356	Homeobox domain
SMART	SM00389	1.2E-6	80	147	IPR001356	Homeobox domain
CDD	cd00086	4.33E-5	83	138	No hit	No description
Pfam	PF00046	6.0E-19	83	142	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-9	84	142	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MSSHSFSNLF HSSTTTTTPN SSTTTLLDSI VATPKHQLTA CICTHCNHLL TFNPAGHGVE 60 QGTNNNNNNN NVQSHHHQLQ QGTRWSPTPI QLLVLEELYR QGTKTPSAEQ IQQIASQLRR 120 FGKIEGKNVF YWFQNHKARE RQKRRRREME ETTAAASAKG NQLITILVKI KLSRDSRLKE 180 TGCEVKETKK WASTSNCNGG GGHAVQESMS AVDISEKESN GWNEFEERVL RRNRSERQAK 240 YFNIPSINIA ATASVASQIT HNIQLLSTHH HPQHHNYNNK QDNNSSHPRT LELFPIHKNH 300 DDDDDIISFS DRNSNKLCAN ASMEEALSCD QFFEFLPLRN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.V9RYQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015960260.1	0.0	WUSCHEL-related homeobox 1
Refseq	XP_025695074.1	0.0	WUSCHEL-related homeobox 1
TrEMBL	A0A445DH56	0.0	A0A445DH56_ARAHY; Uncharacterized protein
STRING	XP_007157754.1	4e-88	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15154	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	3e-26	WUSCHEL related homeobox 1