PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.UD1B0
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 662aa    MW: 73257.3 Da    PI: 5.7884
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.UD1B0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.83e-21518614295
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                  +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ + +ed  ++++W+++++y  ++ks++y+l+ ++ +FvkangL+egDf+v++  ++ ++++++
  Aradu.UD1B0 518 QKVLKQSDVGSLGRIVLPKKEAETHlpELDARDGISIDMEDiGTSQVWNMRYRYwpNNKSRMYLLE-NTGDFVKANGLQEGDFIVIY--SDlKCGKFM 612
                  79*************************99999*********7777*********777777777777.********************..677888766 PP

                  EE CS
           B3  94 vk 95 
                  ++
  Aradu.UD1B0 613 IR 614
                  65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-29508628IPR015300DNA-binding pseudobarrel domain
CDDcd100159.47E-36515616No hitNo description
SuperFamilySSF1019366.87E-23516612IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.715517619IPR003340B3 DNA binding domain
SMARTSM010191.3E-20517617IPR003340B3 DNA binding domain
PfamPF023622.0E-17518614IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MKSEVEVNDA GFGTMDDANN NTNKNIEEDL SEVNYEWFHE DPNLFYDDFP PLPDLPCISS  60
PPSSSSSSSS FSSSKPAEKP ITACSSSSSA SSSSSSSCAA LRKDMQKPNN TNITETEVPL  120
CSTTSMDISQ TAMDSNPLFP NNVVGDCMDM MDMEMEPFGF IDFLEEQNNA DFFDPDSIFQ  180
HNFLQTENES EIPSLQQNQF TQQPPPAPEA EEGVTNNNRE EGEMVIHHED DGNDEMSSVF  240
LEWLKTNKDK ISASDLRSVK LKKSTIESAA KRLGGGKQGM KRLLKLILEW VQTNHLKNKN  300
PIESSSNPNN CFNKPQLSPL PPPCIYASHN PALMVQYPPQ PAYVTDAGAD YINNKNSWPN  360
SQLNSFTTHY NQPFGENHLL PAVLYGNQYP YQLFYGNGNC GGGGGDHGWR RLGPLATKEA  420
RKKRMARQRK CSSNQRQNNH WGQPQNQSQV ADTVTGAENW VCWQGVAGAA APAPAPALPA  480
EPQPASLGQN HGHQGRGSSD KRPQGWKSSE KNLKFLLQKV LKQSDVGSLG RIVLPKKEAE  540
THLPELDARD GISIDMEDIG TSQVWNMRYR YWPNNKSRMY LLENTGDFVK ANGLQEGDFI  600
VIYSDLKCGK FMIRGVKVRQ AGGTKSETKT AAGKSQKNQH TVVNGPNNNA TSSSRDQPKM  660
KI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-375136201108B3 domain-containing transcription factor FUS3
6j9b_D2e-375136201108B3 domain-containing transcription factor FUS3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.UD1B0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015949985.10.0B3 domain-containing transcription factor ABI3 isoform X2
TrEMBLA0A445EC350.0A0A445EC35_ARAHY; Uncharacterized protein
STRINGXP_007140552.11e-156(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94483037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-111B3 family protein