PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.TA161
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 417aa    MW: 45836.1 Da    PI: 7.5857
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.TA161genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.6e-0994114526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+++ + G C yG+rCkF+H+
  Aradu.TA161  94 VCNYWVQ-GNCGYGERCKFIHS 114
                  6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.262549IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.3472950IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.80789116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-690114IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-691115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-793112IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-694114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.105.0E-45113407IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003206.9E-5120159IPR001680WD40 repeat
SuperFamilySSF509788.55E-44121408IPR017986WD40-repeat-containing domain
PfamPF004000.023123159IPR001680WD40 repeat
PROSITE profilePS5029420.804127329IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.115127168IPR001680WD40 repeat
PRINTSPR003206.2E-6146160IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780146160IPR019775WD40 repeat, conserved site
SMARTSM003202.7199236IPR001680WD40 repeat
SMARTSM003203.8E-5243280IPR001680WD40 repeat
PfamPF004000.0016246280IPR001680WD40 repeat
PROSITE profilePS5008212.848250289IPR001680WD40 repeat
PRINTSPR003206.2E-6267281IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780267281IPR019775WD40 repeat, conserved site
SMARTSM003200.0057283320IPR001680WD40 repeat
PfamPF004000.0025285319IPR001680WD40 repeat
PRINTSPR003206.2E-6307321IPR020472G-protein beta WD-40 repeat
SMARTSM003203.6324367IPR001680WD40 repeat
SMARTSM003204.2373407IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDVDGGNKRV FHRLAGATAA DTRHHQKKVC YHWQAGNCNR HPCPFLHSAT VYGSTMSCNN  60
NNGRRSHTFM NGTSTWGHGC GGGNHRAVRK ADKVCNYWVQ GNCGYGERCK FIHSWSCGDG  120
FSLLTQLEGH TKVVSGIALP SGSDKLYTAS IDETLRVWDC QSGQCTAEIN VGGEVGCMIN  180
EGPWIFVGIP NCVRAWNTQT CMELSLQGPV GQVYALVVNN DILFAGTQDG SILAWKFNVV  240
VNVFEPAASL TGHSRGVVSL VVGPNRLYSA SMDNTIRVWN LEHLQCLQIL TDHTSIVMSV  300
LCWDQFLLSC SLDKTVKVWV TTESGKLEVT YTHKEEHGVV ALCGVHDSQG KPILLCSCTD  360
NTLRLYELPS FLDRGKIFTK QEIRTIKMGP GGIFFTGDGS GQVRVWNWAI DPTISIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-191064075323Tako8
6g6n_A5e-191064075323Tako8
6g6n_B5e-191064075323Tako8
6g6n_C5e-191064075323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.TA161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941375.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A445BFX10.0A0A445BFX1_ARAHY; Uncharacterized protein
STRINGXP_004513686.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1