PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.T9TSZ
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 775aa    MW: 87787.5 Da    PI: 9.399
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.T9TSZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.42.6e-131399595
                 -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3  5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                  +++ +l++g l++ ++f++eh +g+  +   + l  ++g +W++    +k++  + + +GWk+F++   L+   +++Fk++g+s+f+  + 
  Aradu.T9TSZ 13 IVNETSLQNGELRIRRSFVSEHwQGI-SS--PVLLVLPNGSEWKMDW--EKRDADVCFVQGWKKFAEFYSLEKEQVLMFKYEGKSRFNVIIL 99
                 5689999***************9555.24..48888999********..*********************************9999954443 PP
2B342.79.8e-14311398194
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f  +l++s v +++   +p  fa+++  +k++   lt  +  +r We+kl y  + +   l++GW +Fvk+ +Lke D ++F+l++r++f + v
  Aradu.T9TSZ 311 FTITLKQSQVKSTA--HIPYGFAKKYL-QKAKA--LT-LQIGNRIWEIKLDYYPHHCYARLSSGWPKFVKDCNLKEADECTFQLIDRENFVFDV 398
                  66778889999887..9*********4.44453..44.45677*******999999999**************************999995555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.02E-173102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-174102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-9999No hitNo description
PROSITE profilePS5086311.1669102IPR003340B3 DNA binding domain
SMARTSM010198.4E-1110102IPR003340B3 DNA binding domain
PfamPF023625.6E-101498IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-4192267IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-15307398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.193309404IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-14310397IPR015300DNA-binding pseudobarrel domain
PfamPF023625.8E-12311398IPR003340B3 DNA binding domain
SMARTSM010195.7E-7311402IPR003340B3 DNA binding domain
CDDcd100172.41E-14311400No hitNo description
CDDcd053015.49E-114425735No hitNo description
SuperFamilySSF522837.44E-22426565No hitNo description
PfamPF003893.1E-17442735IPR006139D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Gene3DG3DSA:3.40.50.7207.3E-24449543IPR016040NAD(P)-binding domain
SuperFamilySSF517359.51E-47529712IPR016040NAD(P)-binding domain
PfamPF028269.7E-46538711IPR006140D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain
Gene3DG3DSA:3.40.50.7201.1E-49544713IPR016040NAD(P)-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009854Biological Processoxidative photosynthetic carbon pathway
GO:0042631Biological Processcellular response to water deprivation
GO:0055114Biological Processoxidation-reduction process
GO:0071482Biological Processcellular response to light stimulus
GO:0005777Cellular Componentperoxisome
GO:0003677Molecular FunctionDNA binding
GO:0008266Molecular Functionpoly(U) RNA binding
GO:0008465Molecular Functionglycerate dehydrogenase activity
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MSSPPGPIHF FQIVNETSLQ NGELRIRRSF VSEHWQGISS PVLLVLPNGS EWKMDWEKRD  60
ADVCFVQGWK KFAEFYSLEK EQVLMFKYEG KSRFNVIILG RSGLEREYPL LNGTLEAEGS  120
GNSKRPNSPL RNSPKKRRTN TEEEARFNAC SHNARPRDRD GRRIFSKSEA SNNVEAPKHA  180
ESSSALERAW AFSSLNPWFY RRMRPAYINN YLLFRAEDYV TEEERKENEF LSLWVTDESR  240
PWHAKISKHD SNGQIMLTTG WKQFMEQTKA TKPMLETVLL KGAMKELQKN TQKVSDYKRR  300
GRASKWTEDQ FTITLKQSQV KSTAHIPYGF AKKYLQKAKA LTLQIGNRIW EIKLDYYPHH  360
CYARLSSGWP KFVKDCNLKE ADECTFQLID RENFVFDVQL NSNYYSTVSM AKPVSIEVWN  420
PNGKYRVVST KPMPGTRWIN LLIQQDCRVE ICTQKKTILS VEDIIQLIGD KCDGVIGQLT  480
EDWGEELFKA LSRAGGKAFS NMAVGYNNVD VNVATKYGVA VGNTPGVLTE TTAELAASLT  540
LAAARRIVEA DEFMRAGLYD GWLPHLFVGN LLKGQTVGVI GAGRIGSAYA RMMHSVLAYG  600
EFLKANGEKP VTWKRASSMD EVLQQADIIS LHPVLDKTTY HLVNKERLSK MKKEAILINC  660
SRGPVIDEAA LVDHLRENPM FRVGLDVFED EPYMKPGLSE MKNAIVVPHI ASASKWTREG  720
MATLAALNVL GKIKGYPIWF DANRVEPFLN ENTPPPAACP SIVNAKALGL PVSKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5aov_A8e-5346273537314GLYOXYLATE REDUCTASE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123136KRPNSPLRNSPKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.T9TSZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025620794.10.0B3 domain-containing protein LOC_Os12g40080 isoform X2
TrEMBLA0A0L9U0S70.0A0A0L9U0S7_PHAAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF952122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-13B3 family protein