PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.T8YI8
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 405aa    MW: 46521.3 Da    PI: 8.0478
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.T8YI8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.61.1e-0971125255
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtr 55 
                  fYn++++  GFs+rk k  +s+ +++i ++tfvCs++g+r  +  + t+++r ++
  Aradu.T8YI8  71 FYNAFGRVNGFSIRKFKVGRSEIDKRILWQTFVCSRQGYRIFRGVDeTNRKRAPK 125
                  9**************************************9888777233444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-871129IPR004330FAR1 DNA binding domain
Gene3DG3DSA:4.10.60.108.1E-5334358IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MVDSIEESSH NQIGNVSAEE MDELLVDSDG NDVENLLLNS TGSIGRVNFI GLSVDAAKKY  60
VFSDLDVAYA FYNAFGRVNG FSIRKFKVGR SEIDKRILWQ TFVCSRQGYR IFRGVDETNR  120
KRAPKPETSI KEFLHHFRRW MGLLRNNKAE ADYYTSYGFP IMQTQVQALE RSGASVYTRE  180
VFYLFRSLLL KASSVIIVDW RETLCSVNYD VRKYCELTRK WVVSYWPGSK LPESLILKRW  240
TMKAKEAHIR LEQQGSLVGD GSYESRIAAM NDELEGLPFA ACGDLSDFKD VMEWVRNKKA  300
ELFAKHKKNR EGSSKSAGEK FKTWTVATSK EPGDKKKKRR IRCSRCNGIG HNRRNCRRGD  360
EHNQMESGDE GGSEDDDDWS SQTSEEEIDE MDFDVTIANQ KGKYH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334339KKKKRR
2335339KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.T8YI8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967752.20.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445AIA21e-159A0A445AIA2_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1459823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-08FAR1 family protein