PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.T8LHC

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 609aa MW: 68837.2 Da PI: 6.8632

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.T8LHC	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.9	2.2e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a l++ k++ +w+vt +++ HnHel Aradu.T8LHC 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQVKPSDDGKMQRNRKSSRCGCQAYLRIVKKSdfdVPEWRVTGFSNVHNHELL 152 6*************9998874556679***************9***************98887676789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-9	275	350	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.693	406	439	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-5	413	436	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-5	414	441	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MSEGTSLVLE SSENCTDLSQ DEIGTIEETP EETILSRQTS VNLVPFIGQR FVSQEAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QVKPSDDGKM QRNRKSSRCG 120 CQAYLRIVKK SDFDVPEWRV TGFSNVHNHE LLKSNEVRLL PAYCTISPDD KSRICMFAKA 180 GMSVRQMLRL MELEKGIKVG CLPFTEMDVR NLLQSFRNVE RDNDAIDLIA MCKRLKDENP 240 NFKYEFKIDS NNRLEHIAWS YSSSVQSYES FGDAVVFDTT HRVDAYDMLL GIWLGVDNHG 300 MTCFFGCTLL RDENMQSFSW ALKVADIVDF NDRVGLKQKM QRKAQKVCLK TGSPVESHAA 360 TVLTPYALSK LQDELVLAPQ YASFLVDEGC FQVRHHTQTD GGCKVFWVPC QAHITCSCHL 420 FEFSGTLCRH VLRVMSTNNC FHIPDQYLPT RWRGGGLSSV NQFRGVTTRD QPERMQFLES 480 MVSTLIMESI ETEERLDVAC EQMSVALSRI KALPRPPAHG VNDITYSYSS DSLILPEVED 540 TDGIIHGFAN PHDSIALGKL KERRARDVVD VTRKRRQFPG PLCGQYVHDP SDCSIMAGDN 600 LGGDGLGYL

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MSEGTSLVLE SSENCTDLSQ DEIGTIEETP EETILSRQTS VNLVPFIGQR FVSQEAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QVKPSDDGKM QRNRKSSRCG  120
CQAYLRIVKK SDFDVPEWRV TGFSNVHNHE LLKSNEVRLL PAYCTISPDD KSRICMFAKA  180
GMSVRQMLRL MELEKGIKVG CLPFTEMDVR NLLQSFRNVE RDNDAIDLIA MCKRLKDENP  240
NFKYEFKIDS NNRLEHIAWS YSSSVQSYES FGDAVVFDTT HRVDAYDMLL GIWLGVDNHG  300
MTCFFGCTLL RDENMQSFSW ALKVADIVDF NDRVGLKQKM QRKAQKVCLK TGSPVESHAA  360
TVLTPYALSK LQDELVLAPQ YASFLVDEGC FQVRHHTQTD GGCKVFWVPC QAHITCSCHL  420
FEFSGTLCRH VLRVMSTNNC FHIPDQYLPT RWRGGGLSSV NQFRGVTTRD QPERMQFLES  480
MVSTLIMESI ETEERLDVAC EQMSVALSRI KALPRPPAHG VNDITYSYSS DSLILPEVED  540
TDGIIHGFAN PHDSIALGKL KERRARDVVD VTRKRRQFPG PLCGQYVHDP SDCSIMAGDN  600
LGGDGLGYL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	571	576	TRKRRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.T8LHC

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020247495.1	0.0	protein FAR1-RELATED SEQUENCE 11-like isoform X4
Swissprot	Q9SY66	1e-137	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A444ZF99	0.0	A0A444ZF99_ARAHY; Uncharacterized protein
STRING	GLYMA09G04394.1	0.0	(Glycine max)
STRING	GLYMA15G15450.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-127	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]