PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.T1R09 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 101aa MW: 11627.6 Da PI: 8.9666 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.3 | 4.3e-11 | 7 | 78 | 18 | 93 |
--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +p +f + h g++ + + ++ + +W++ l r +++r ++++GW++ ++ gLk gD++vF++++++ +++ Aradu.T1R09 7 IPIEFSRVHlhGLE--G--KAKIGVNGNMRWDIVL--RFCGDRATFSAGWRNVSNDFGLKFGDVCVFEMIKDTPLSFN 78 78888877754332..3..4666667789******..77888899***********************9987655443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.209 | 1 | 85 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-12 | 5 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-15 | 6 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.94E-9 | 6 | 80 | No hit | No description |
Pfam | PF02362 | 9.3E-9 | 6 | 79 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MILEQRIPIE FSRVHLHGLE GKAKIGVNGN MRWDIVLRFC GDRATFSAGW RNVSNDFGLK 60 FGDVCVFEMI KDTPLSFNIF LIRPKQQPIS LCHQNLPVLE R |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.T1R09 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020989796.1 | 2e-66 | uncharacterized protein LOC110277002 | ||||
Refseq | XP_025625941.2 | 2e-66 | B3 domain-containing protein REM9-like | ||||
TrEMBL | A0A445B0W5 | 3e-61 | A0A445B0W5_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19243 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18090.1 | 6e-11 | B3 family protein |