PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.S5QF1
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 381aa    MW: 42455.8 Da    PI: 7.7181
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.S5QF1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18295328134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Aradu.S5QF1 295 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 328
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-16289339IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.648289325IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-14292350No hitNo description
Gene3DG3DSA:3.30.50.102.7E-14293326IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.02E-14294341No hitNo description
PROSITE patternPS003440295320IPR000679Zinc finger, GATA-type
PfamPF003201.7E-16295328IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MSEDVGNNMK DSWFFEKNFN GLSDEAFDDV FSFLDFPLED VEPNVVEEDW DAQFKRIEPC  60
YDVFSVSSTV LCSDKTQNEK PQLGGSFSGS VVYWENVPHD LMSTAELISQ CTPLCTRSWN  120
FTGLHSCMAR GEKGRKLEVA QTFLLSNEVS PIKQLDETAG LDVGKTILNQ NSSLNGKDLH  180
QLRTYSPVSV FESSSTSSAE NSNLDLPAIP VKRARSKRQR ASSFSPLFVI PSVPTSPAWQ  240
IYEMKVDPES NLGTHHAGKS LNNTKKQRKR DLPVLSGHND MKRSSSQEPV PTRKCMHCEV  300
TKTPQWREGP MGPKTLCNAC GVRYRSGRLF PEYRPAASPT FVPSVHSNCH KKVIEMRSKG  360
IQASLRNPLS AMSNLHGNSV G
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.S5QF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935768.10.0GATA transcription factor 11
TrEMBLA0A445BVY80.0A0A445BVY8_ARAHY; Uncharacterized protein
STRINGGLYMA12G29730.11e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-40GATA family protein