PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.RZ9Z0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 339aa MW: 37882.6 Da PI: 9.6023 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.6e-30 | 195 | 253 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s gC ++k+vers +dp+++++tY+geH+h Aradu.RZ9Z0 195 SDLWAWRKYGQKPIKGSPYPRNYYRCSSCkGCVARKQVERSLSDPTMFVVTYTGEHKHA 253 799***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-30 | 180 | 255 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.927 | 189 | 255 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-26 | 189 | 255 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-35 | 194 | 254 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-24 | 196 | 252 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007263 | Biological Process | nitric oxide mediated signal transduction | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MSNEEDWDLF AIVRSCKAAN NTAQTPQDTT KTSSNSIMST SSTTCLATTT ITAEQNDGPF 60 SSNNFVQPRT NGFQELEQLL NTFNPTITTT TTTTSAHGIN SNNPPTFPDF TAPPSTLGAS 120 TSGFDDRFHH HQQHQQKQHN LLQVQVPQTS TTTSLTLLPS SESQSQSQTQ TPRSRKRKSQ 180 QKKMVCHVTA DNLSSDLWAW RKYGQKPIKG SPYPRNYYRC SSCKGCVARK QVERSLSDPT 240 MFVVTYTGEH KHAKPAHRNS LAGSTRKPST PRLAETQENN DTKNPNNNNK NNSPDEKAQN 300 SSXXXXXXXX XXXXXXXXXX XXXXXXXXXX HNSFFFGGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-18 | 192 | 256 | 15 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-18 | 192 | 256 | 15 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 178 | SRKRKS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00561 | DAP | Transfer from AT5G52830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.RZ9Z0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015967146.1 | 0.0 | probable WRKY transcription factor 27 | ||||
TrEMBL | A0A444YXB0 | 1e-147 | A0A444YXB0_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA16G29561.1 | 2e-77 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6794 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 9e-47 | WRKY DNA-binding protein 27 |